| Matrix_146 | ORA47 | Not available | Upstream | -5 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -5 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -5 |
| Matrix_272 | DEAR4 | Not available | Upstream | -5 |
| Matrix_288 | RAP2.3 | Not available | Upstream | -6 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -6 |
| Matrix_363 | RAP2.3 | Not available | Upstream | -6 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -7 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -7 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -6 |
| Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Intron | 154 |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -7 |
| Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Intron | 154 |
| | | Intron | 152 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 153 |
| | | Intron | 151 |
| | | Intron | 149 |
| | | Intron | 147 |
| | | Intron | 145 |
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