View conserved binding sites


Gene
GM10G29190
Description
No description available
Alias
Glyma10g29190;Glyma10g29190.1;PAC:26347114;Glyma10g29190.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-155
Upstream-156
Upstream-264
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-155
Upstream-156
Matrix_109GBF3Not availableUpstream-157
Upstream-158
Upstream-173
Matrix_113ABI5Not availableUpstream-157
Upstream-158
Upstream-263
Upstream-264
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-152
Upstream-153
Upstream-154
Upstream-217
Matrix_120BEE2Not availableUpstream-156
Upstream-157
Matrix_122ABF1;AREB2Not availableUpstream-155
Upstream-156
Upstream-157
Upstream-220
Upstream-263
Upstream-264
Matrix_129ABF1Not availableUpstream-156
Upstream-157
Upstream-264
Upstream-265
Matrix_130TCP16Not availableUpstream-226
Matrix_133DYT1Not availableUpstream-151
Upstream-152
Upstream-260
Matrix_134ABF1Not availableUpstream-265
Upstream-266
Matrix_14ZCW32;AT5G62610Not availableUpstream-157
Upstream-158
Matrix_144AT5G08330;AT5G23280Not availableUpstream-226
Upstream-227
Matrix_145GBF4;AT5G44080Not availableUpstream-157
Upstream-158
Matrix_147ERF3;AT1G80580Not availableUpstream-84
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-152
Upstream-153
Upstream-163
Upstream-217
Upstream-261
Matrix_156POC1Not availableUpstream-155
Upstream-156
Upstream-157
Upstream-158
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-156
Upstream-157
Matrix_189WRI1An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesisUpstream-85
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-153
Upstream-154
Matrix_192FHY3/FAR1Not availableUpstream-173
Upstream-261
Upstream-262
Matrix_194HYH;HY5Not availableUpstream-262
Matrix_196TCP20;AT5G41030Not availableUpstream-224
Upstream-228
Upstream-229
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-156
Upstream-157
Matrix_214AP1Not availableUpstream-154
Upstream-155
Matrix_216TCP16Not availableUpstream-226
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-261
Upstream-262
Matrix_232TCP23Not availableUpstream-225
Upstream-227
Upstream-228
Matrix_233MYC3Not availableUpstream-157
Upstream-158
Matrix_24POC1Not availableUpstream-152
Upstream-153
Upstream-163
Upstream-217
Upstream-261
Matrix_247PIF3Not availableUpstream-156
Upstream-157
Matrix_264ATAREB1Not availableUpstream-153
Upstream-154
Upstream-156
Upstream-157
Upstream-261
Upstream-262
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-226
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-228
Matrix_278AtbZIP44Not availableUpstream-296
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-226
Matrix_294MEE35Not availableUpstream-226
Matrix_296GBF2Not availableUpstream-157
Upstream-158
Upstream-173
Matrix_297TCP15Not availableUpstream-225
Upstream-227
Upstream-228
Matrix_300bZIP68;bZIP16Not availableUpstream-157
Upstream-158
Upstream-173
Matrix_301PIL5Not availableUpstream-151
Upstream-152
Upstream-157
Upstream-158
Upstream-260
Matrix_330MYC2;TT8Not availableUpstream-156
Upstream-157
Matrix_331GBF1Not availableUpstream-157
Upstream-158
Upstream-173
Matrix_332SPT;ALCNot availableUpstream-156
Upstream-157
Upstream-158
Matrix_338AP2Not availableUpstream-262
Matrix_345POC1Not availableUpstream-152
Upstream-153
Upstream-154
Upstream-217
Upstream-218
Matrix_348AT5G51910Not availableUpstream-226
Upstream-227
Matrix_356PRR5Not availableUpstream-258
Upstream-262
Matrix_359FLCNot availableUpstream-154
Upstream-155
Matrix_369AT2G18300Not availableUpstream-156
Matrix_403BZR1Not availableUpstream-154
Upstream-155
Upstream-263
Matrix_406ATERF-7Not availableUpstream-82
Upstream-83
Matrix_42AT2G45680Not availableUpstream-226
Upstream-227
Matrix_438AtbZIP63Not availableUpstream-156
Upstream-157
Upstream-170
Matrix_443AGL15Not availableUpstream-154
Upstream-155
Upstream-263
Matrix_45DRNNot availableUpstream-84
Upstream-85
Matrix_456bZIP60Not availableUpstream-172
Matrix_462ATERF-8Not availableUpstream-82
Upstream-83
Matrix_465MYC4Not availableUpstream-156
Upstream-157
Matrix_480BES1Not availableUpstream-156
Upstream-157
Matrix_484ATERF13Not availableUpstream-84
Upstream-85
Matrix_488ABF1Not availableUpstream-148
Upstream-149
Upstream-220
Upstream-257
Matrix_507TCP3Not availableUpstream-225
Matrix_514DYT1Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen developmentUpstream-263
Matrix_53MYC3Not availableUpstream-158
Upstream-159
Upstream-223
Upstream-262
Upstream-263
Matrix_55PIF3Not availableUpstream-155
Upstream-156
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-157
Upstream-158
Upstream-171
Matrix_60AT1G01260;AT5G57150Not availableUpstream-157
Upstream-158
Matrix_64PIF5Not availableUpstream-157
Upstream-158
Matrix_65POC1;PIL1Not availableUpstream-157
Upstream-158
Matrix_7PIF4Not availableUpstream-158
Upstream-159
Upstream-264
Upstream-265
Matrix_77PRR5Not availableUpstream-154
Upstream-155
Upstream-263
Matrix_80BIM1Not availableUpstream-157
Upstream-158
Matrix_82TCP17Not availableUpstream-226
Matrix_94TCP5Not availableUpstream-226
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-267
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-168
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-143
Upstream-205
Upstream-371
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-355
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-158
Upstream-266
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-143
Upstream-205
Upstream-371
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-158
Upstream-168
Upstream-266
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-157
Upstream-158
Upstream-221
Upstream-265
Motif_244ABRE-like binding site motifNot availableUpstream-173
Upstream-264
Upstream-1843
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-265
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-158
Upstream-173
Upstream-266
Upstream-1845
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-84
Upstream-138
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-172
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-172
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-168
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-157
Upstream-158
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-172
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-157
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-163
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-174
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-159
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-172
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-140
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-226
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-107
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-174
Upstream-264
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-356
Motif_648ARE2ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1Upstream-269
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-172
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterUpstream-77
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-107
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-264
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-175