Matrix_104 | PI | Not available | Upstream | -155 |
| | | Upstream | -156 |
| | | Upstream | -264 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -155 |
| | | Upstream | -156 |
Matrix_109 | GBF3 | Not available | Upstream | -157 |
| | | Upstream | -158 |
| | | Upstream | -173 |
Matrix_113 | ABI5 | Not available | Upstream | -157 |
| | | Upstream | -158 |
| | | Upstream | -263 |
| | | Upstream | -264 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -152 |
| | | Upstream | -153 |
| | | Upstream | -154 |
| | | Upstream | -217 |
Matrix_120 | BEE2 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -155 |
| | | Upstream | -156 |
| | | Upstream | -157 |
| | | Upstream | -220 |
| | | Upstream | -263 |
| | | Upstream | -264 |
Matrix_129 | ABF1 | Not available | Upstream | -156 |
| | | Upstream | -157 |
| | | Upstream | -264 |
| | | Upstream | -265 |
Matrix_130 | TCP16 | Not available | Upstream | -226 |
Matrix_133 | DYT1 | Not available | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -260 |
Matrix_134 | ABF1 | Not available | Upstream | -265 |
| | | Upstream | -266 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -84 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -152 |
| | | Upstream | -153 |
| | | Upstream | -163 |
| | | Upstream | -217 |
| | | Upstream | -261 |
Matrix_156 | POC1 | Not available | Upstream | -155 |
| | | Upstream | -156 |
| | | Upstream | -157 |
| | | Upstream | -158 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_189 | WRI1 | An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis | Upstream | -85 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -153 |
| | | Upstream | -154 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -173 |
| | | Upstream | -261 |
| | | Upstream | -262 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -262 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -224 |
| | | Upstream | -228 |
| | | Upstream | -229 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_214 | AP1 | Not available | Upstream | -154 |
| | | Upstream | -155 |
Matrix_216 | TCP16 | Not available | Upstream | -226 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -261 |
| | | Upstream | -262 |
Matrix_232 | TCP23 | Not available | Upstream | -225 |
| | | Upstream | -227 |
| | | Upstream | -228 |
Matrix_233 | MYC3 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_24 | POC1 | Not available | Upstream | -152 |
| | | Upstream | -153 |
| | | Upstream | -163 |
| | | Upstream | -217 |
| | | Upstream | -261 |
Matrix_247 | PIF3 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_264 | ATAREB1 | Not available | Upstream | -153 |
| | | Upstream | -154 |
| | | Upstream | -156 |
| | | Upstream | -157 |
| | | Upstream | -261 |
| | | Upstream | -262 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -226 |
Matrix_268 | EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105 | Not available | Upstream | -228 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -296 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -226 |
Matrix_294 | MEE35 | Not available | Upstream | -226 |
Matrix_296 | GBF2 | Not available | Upstream | -157 |
| | | Upstream | -158 |
| | | Upstream | -173 |
Matrix_297 | TCP15 | Not available | Upstream | -225 |
| | | Upstream | -227 |
| | | Upstream | -228 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -157 |
| | | Upstream | -158 |
| | | Upstream | -173 |
Matrix_301 | PIL5 | Not available | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -157 |
| | | Upstream | -158 |
| | | Upstream | -260 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_331 | GBF1 | Not available | Upstream | -157 |
| | | Upstream | -158 |
| | | Upstream | -173 |
Matrix_332 | SPT;ALC | Not available | Upstream | -156 |
| | | Upstream | -157 |
| | | Upstream | -158 |
Matrix_338 | AP2 | Not available | Upstream | -262 |
Matrix_345 | POC1 | Not available | Upstream | -152 |
| | | Upstream | -153 |
| | | Upstream | -154 |
| | | Upstream | -217 |
| | | Upstream | -218 |
Matrix_348 | AT5G51910 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_356 | PRR5 | Not available | Upstream | -258 |
| | | Upstream | -262 |
Matrix_359 | FLC | Not available | Upstream | -154 |
| | | Upstream | -155 |
Matrix_369 | AT2G18300 | Not available | Upstream | -156 |
Matrix_403 | BZR1 | Not available | Upstream | -154 |
| | | Upstream | -155 |
| | | Upstream | -263 |
Matrix_406 | ATERF-7 | Not available | Upstream | -82 |
| | | Upstream | -83 |
Matrix_42 | AT2G45680 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -156 |
| | | Upstream | -157 |
| | | Upstream | -170 |
Matrix_443 | AGL15 | Not available | Upstream | -154 |
| | | Upstream | -155 |
| | | Upstream | -263 |
Matrix_45 | DRN | Not available | Upstream | -84 |
| | | Upstream | -85 |
Matrix_456 | bZIP60 | Not available | Upstream | -172 |
Matrix_462 | ATERF-8 | Not available | Upstream | -82 |
| | | Upstream | -83 |
Matrix_465 | MYC4 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_480 | BES1 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_484 | ATERF13 | Not available | Upstream | -84 |
| | | Upstream | -85 |
Matrix_488 | ABF1 | Not available | Upstream | -148 |
| | | Upstream | -149 |
| | | Upstream | -220 |
| | | Upstream | -257 |
Matrix_507 | TCP3 | Not available | Upstream | -225 |
Matrix_514 | DYT1 | Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development | Upstream | -263 |
Matrix_53 | MYC3 | Not available | Upstream | -158 |
| | | Upstream | -159 |
| | | Upstream | -223 |
| | | Upstream | -262 |
| | | Upstream | -263 |
Matrix_55 | PIF3 | Not available | Upstream | -155 |
| | | Upstream | -156 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -157 |
| | | Upstream | -158 |
| | | Upstream | -171 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_64 | PIF5 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_7 | PIF4 | Not available | Upstream | -158 |
| | | Upstream | -159 |
| | | Upstream | -264 |
| | | Upstream | -265 |
Matrix_77 | PRR5 | Not available | Upstream | -154 |
| | | Upstream | -155 |
| | | Upstream | -263 |
Matrix_80 | BIM1 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_82 | TCP17 | Not available | Upstream | -226 |
Matrix_94 | TCP5 | Not available | Upstream | -226 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -267 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -168 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -143 |
| | | Upstream | -205 |
| | | Upstream | -371 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -355 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -158 |
| | | Upstream | -266 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -143 |
| | | Upstream | -205 |
| | | Upstream | -371 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -158 |
| | | Upstream | -168 |
| | | Upstream | -266 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -157 |
| | | Upstream | -158 |
| | | Upstream | -221 |
| | | Upstream | -265 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -173 |
| | | Upstream | -264 |
| | | Upstream | -1843 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -265 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -158 |
| | | Upstream | -173 |
| | | Upstream | -266 |
| | | Upstream | -1845 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -84 |
| | | Upstream | -138 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -172 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -172 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -168 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -157 |
| | | Upstream | -158 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -172 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -157 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -163 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -174 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -159 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -172 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -140 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -226 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -107 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -174 |
| | | Upstream | -264 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Upstream | -356 |
Motif_648 | ARE2 | ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1 | Upstream | -269 |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | Upstream | -172 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -77 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -107 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -264 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -175 |