View conserved binding sites


Gene
GM10G12530
Description
polymerase I subunit RPA1
Alias
Glyma10g12530;Glyma10g12530.1;PAC:26346649;Glyma10g12530.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-2
Matrix_138RRTF1Not availableUpstream-3
Matrix_147ERF3;AT1G80580Not availableUpstream-31
Upstream-1046
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-3
Matrix_224ERF1Not availableUpstream-3
Upstream-6
Matrix_232TCP23Not availableIntron15053
Matrix_252RAP2.6Not availableUpstream-2
Upstream-5
Matrix_272DEAR4Not availableUpstream-2
Matrix_288RAP2.3Not availableUpstream-3
Matrix_295ERF1Not availableUpstream-4
Matrix_321HRDNot availableUpstream-3
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-3
Matrix_343AT2G33710Not availableUpstream-2
Upstream-5
Matrix_355ERF10;ERF11Not availableUpstream-3
Matrix_406ATERF-7Not availableUpstream-4
Upstream-31
Matrix_42AT2G45680Not availableIntron15052
Matrix_426CRF1;CRF2Not availableUpstream-3
Matrix_45DRNNot availableUpstream-31
Matrix_517ERF12Not availableUpstream-1046
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-3
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Upstream-427
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-4
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-428
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-427
Upstream-431
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-269