| Matrix_101 | ERF5 | Not available | Upstream | -169 |
| Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -167 |
| Matrix_119 | RRTF1 | Not available | Upstream | -168 |
| Matrix_138 | RRTF1 | Not available | Upstream | -168 |
| Matrix_146 | ORA47 | Not available | Upstream | -169 |
| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -167 |
| Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -167 |
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -168 |
| Matrix_171 | LBD3;LBD4 | Not available | Upstream | -168 |
| Matrix_190 | ATERF1 | Not available | Upstream | -170 |
| Matrix_224 | ERF1 | Not available | Upstream | -168 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -169 |
| Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -168 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -169 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -168 |
| Matrix_272 | DEAR4 | Not available | Upstream | -169 |
| Matrix_277 | RAP2.6 | Not available | Upstream | -168 |
| Matrix_287 | ERF2 | Not available | Upstream | -169 |
| Matrix_288 | RAP2.3 | Not available | Upstream | -168 |
| Matrix_295 | ERF1 | Not available | Upstream | -167 |
| Matrix_321 | HRD | Not available | Upstream | -168 |
| Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -168 |
| Matrix_334 | AT3G23230 | Not available | Upstream | -168 |
| Matrix_343 | AT2G33710 | Not available | Upstream | -169 |
| Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -167 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -168 |
| Matrix_360 | ORA59 | Not available | Upstream | -167 |
| Matrix_363 | RAP2.3 | Not available | Upstream | -168 |
| Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -168 |
| | | Upstream | -167 |
| Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -168 |
| Matrix_378 | ATERF1 | Not available | Upstream | -169 |
| Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -167 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -167 |
| Matrix_409 | DEAR3 | Not available | Upstream | -168 |
| Matrix_416 | ASL5 | Not available | Upstream | -169 |
| Matrix_426 | CRF1;CRF2 | Not available | Upstream | -168 |
| Matrix_448 | ATERF6 | Not available | Upstream | -168 |
| Matrix_45 | DRN | Not available | Upstream | -167 |
| Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -168 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -167 |
| Matrix_473 | RRTF1 | Not available | Upstream | -169 |
| Matrix_48 | PI | Not available | Upstream | -135 |
| Matrix_484 | ATERF13 | Not available | Upstream | -167 |
| Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -168 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -168 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -168 |
| Matrix_517 | ERF12 | Not available | Upstream | -167 |
| Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -168 |
| Matrix_59 | AT4G00238;AT4G00250 | Not available | Upstream | -168 |
| Matrix_84 | AtGRF6 | Not available | Upstream | -169 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -168 |
| Matrix_91 | CRF3 | Not available | Upstream | -168 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -194 |
| Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -165 |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -166 |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -193 |
| Motif_377 | SURE2STPAT21 | Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato | Upstream | -501 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -157 |
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