Matrix_101 | ERF5 | Not available | Upstream | -638 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -627 |
Matrix_113 | ABI5 | Not available | Upstream | -627 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -625 |
Matrix_120 | BEE2 | Not available | Upstream | -628 |
Matrix_129 | ABF1 | Not available | Upstream | -628 |
| | | Upstream | -629 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -628 |
| | | Upstream | -629 |
Matrix_148 | WRKY60 | Not available | Upstream | -669 |
Matrix_150 | UNE10;PIF7 | Not available | Upstream | -629 |
Matrix_153 | AP2 | Not available | Upstream | -627 |
Matrix_156 | POC1 | Not available | Upstream | -627 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -628 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -631 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -625 |
Matrix_197 | NAP | Not available | Upstream | -670 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -628 |
Matrix_202 | WRKY71;WRKY28;WRKY8 | Not available | Upstream | -670 |
Matrix_207 | WRKY10;WRKY57;AT2G44745;ATWRKY13;WRKY49 | Not available | Upstream | -670 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -625 |
Matrix_220 | WRKY18 | Not available | Upstream | -670 |
Matrix_23 | ANAC46 | Not available | Upstream | -640 |
Matrix_233 | MYC3 | Not available | Upstream | -629 |
Matrix_235 | WRKY67;WRKY64;WRKY63;WRKY66 | Not available | Upstream | -671 |
Matrix_247 | PIF3 | Not available | Upstream | -628 |
Matrix_249 | WRKY11 | Not available | Upstream | -669 |
Matrix_261 | ATERF-1 | Not available | Upstream | -638 |
Matrix_263 | WRKY33;WRKY19;WRKY32 | Not available | Upstream | -670 |
Matrix_264 | ATAREB1 | Not available | Upstream | -625 |
| | | Upstream | -626 |
| | | Upstream | -628 |
| | | Upstream | -629 |
Matrix_27 | ATAIB;ATNIG1 | Not available | Upstream | -629 |
Matrix_289 | WRKY25 | Not available | Upstream | -671 |
Matrix_293 | WRKY38 | Not available | Upstream | -669 |
Matrix_301 | PIL5 | Not available | Upstream | -623 |
Matrix_314 | WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52 | Not available | Upstream | -669 |
Matrix_315 | MYB111 | Not available | Upstream | -694 |
Matrix_316 | WRKY15;WRKY39;WRKY7;WRKY74 | Not available | Upstream | -669 |
Matrix_320 | MYC4 | Not available | Upstream | -629 |
Matrix_323 | BIM3 | Not available | Upstream | -628 |
Matrix_325 | WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2 | Not available | Upstream | -671 |
Matrix_329 | WRKY12 | Not available | Upstream | -669 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -628 |
Matrix_332 | SPT;ALC | Not available | Upstream | -628 |
| | | Upstream | -629 |
Matrix_338 | AP2 | Not available | Upstream | -625 |
Matrix_339 | bHLH104 | Not available | Upstream | -628 |
Matrix_345 | POC1 | Not available | Upstream | -625 |
Matrix_356 | PRR5 | Not available | Upstream | -625 |
| | | Upstream | -626 |
Matrix_357 | WRKY61;WRKY6;WRKY9;WRKY36;WRKY47;WRKY42;WRKY31;WRKY72 | Not available | Upstream | -669 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -629 |
Matrix_368 | ATWRKY56;WRKY45;WRKY75;WRKY24 | Not available | Upstream | -671 |
Matrix_369 | AT2G18300 | Not available | Upstream | -626 |
| | | Upstream | -628 |
Matrix_370 | WRKY50;WRKY51 | Not available | Upstream | -670 |
Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Upstream | -635 |
Matrix_376 | WRKY45 | Not available | Upstream | -669 |
Matrix_389 | ILR3 | Not available | Upstream | -628 |
Matrix_396 | AP3 | Not available | Upstream | -488 |
Matrix_401 | MYB55 | Not available | Upstream | -634 |
Matrix_403 | BZR1 | Not available | Upstream | -626 |
Matrix_415 | WRKY27 | Not available | Upstream | -670 |
Matrix_416 | ASL5 | Not available | Upstream | -638 |
Matrix_437 | MYC2 | Not available | Upstream | -629 |
Matrix_443 | AGL15 | Not available | Upstream | -626 |
| | | Upstream | -627 |
Matrix_449 | BIM2 | Not available | Upstream | -628 |
Matrix_452 | MYB46 | Not available | Upstream | -634 |
Matrix_455 | MYB111 | Not available | Upstream | -634 |
Matrix_465 | MYC4 | Not available | Upstream | -628 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -629 |
Matrix_480 | BES1 | Not available | Upstream | -628 |
Matrix_488 | ABF1 | Not available | Upstream | -627 |
| | | Upstream | -628 |
Matrix_500 | WRKY43 | Not available | Upstream | -669 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -631 |
| | | Upstream | -632 |
Matrix_53 | MYC3 | Not available | Upstream | -630 |
Matrix_55 | PIF3 | Not available | Upstream | -627 |
Matrix_58 | WRKY55;ATWRKY54;WRKY46;WRKY70;AtWRKY41;WRKY53;WRKY30 | Not available | Upstream | -668 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -629 |
Matrix_64 | PIF5 | Not available | Upstream | -629 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -630 |
Matrix_7 | PIF4 | Not available | Upstream | -628 |
Matrix_75 | WRKY29 | Not available | Upstream | -670 |
Matrix_77 | PRR5 | Not available | Upstream | -626 |
Matrix_80 | BIM1 | Not available | Upstream | -627 |
Matrix_91 | CRF3 | Not available | Upstream | -638 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -629 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -630 |
Motif_183 | TRANSINITDICOTS | Context sequence of translational initiation codon in dicots | Upstream | -623 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -630 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -629 |
| | | Upstream | -630 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -488 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -77 |
| | | Upstream | -303 |
| | | Upstream | -763 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -630 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -630 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -623 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -310 |
| | | Upstream | -881 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -331 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -694 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -331 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -198 |
| | | Upstream | -286 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -629 |