View conserved binding sites


Gene
GM08G41490
Description
Chromodomain-helicase-DNA-binding protein 1
Alias
Glyma08g41490;Glyma08g41490.1;PAC:26310437;Glyma08g41490.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1416
Matrix_138RRTF1Not availableUpstream-1415
Matrix_147ERF3;AT1G80580Not availableUpstream-1260
Upstream-1261
Upstream-1416
Matrix_151ASIL1Not availableUpstream-1333
Matrix_171LBD3;LBD4Not availableUpstream-1226
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableIntron3242
Matrix_224ERF1Not availableUpstream-1415
Upstream-1427
Matrix_234RAP2.3Not availableUpstream-1416
Matrix_252RAP2.6Not availableUpstream-1416
Upstream-1426
Matrix_261ATERF-1Not availableUpstream-1416
Matrix_272DEAR4Not availableUpstream-1416
Matrix_283GATA15;GATA17;AT4G16141;GATA22;GATA23;GATA16;GNCNot availableUpstream-1269
Matrix_288RAP2.3Not availableUpstream-1415
Matrix_295ERF1Not availableUpstream-1416
Matrix_321HRDNot availableUpstream-1416
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1415
Matrix_334AT3G23230Not availableUpstream-1417
Matrix_343AT2G33710Not availableUpstream-1416
Matrix_355ERF10;ERF11Not availableUpstream-1415
Matrix_360ORA59Not availableUpstream-1416
Matrix_363RAP2.3Not availableUpstream-1415
Matrix_373E2FENot availableUpstream-1184
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1416
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-1416
Matrix_378ATERF1Not availableUpstream-1416
Upstream-1426
Matrix_406ATERF-7Not availableUpstream-1260
Upstream-1261
Upstream-1414
Matrix_409DEAR3Not availableUpstream-1415
Matrix_426CRF1;CRF2Not availableUpstream-1417
Matrix_45DRNNot availableUpstream-1260
Upstream-1261
Upstream-1416
Matrix_462ATERF-8Not availableUpstream-1260
Upstream-1261
Upstream-1414
Matrix_473RRTF1Not availableUpstream-1416
Upstream-1426
Matrix_484ATERF13Not availableUpstream-1260
Upstream-1261
Upstream-1416
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1416
Matrix_498AT2G28710;AT3G46070;AT3G46080;ZAT7Not availableUpstream-518
Matrix_5AT5G51190;ERF104Not availableUpstream-1416
Matrix_506DRNL;ATERF-4Not availableUpstream-1417
Matrix_517ERF12Not availableUpstream-1416
Upstream-1428
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1333
Upstream-1415
Matrix_64PIF5Not availableUpstream-54
Matrix_8KAN1Not availableUpstream-1284
Matrix_80BIM1Not availableUpstream-54
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1417
Matrix_91CRF3Not availableUpstream-1416
Motif_131P1BSPHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtiiUpstream-1285
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-1247
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-1288
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-1262
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1248
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-1249
Upstream-1250
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1810
Upstream-1811
Upstream-1812
Upstream-1813
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1809
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-1809