View conserved binding sites


Gene
GM08G28370
Description
finger protein CONSTANS-LIKE 2
Alias
Glyma08g28370;Glyma08g28370.1;PAC:26308125;Glyma08g28370.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-187
Upstream-188
Matrix_109GBF3Not availableUpstream-187
Upstream-188
Upstream-189
Upstream-190
Matrix_113ABI5Not availableUpstream-187
Upstream-188
Upstream-189
Upstream-190
Matrix_120BEE2Not availableUpstream-188
Upstream-189
Matrix_122ABF1;AREB2Not availableUpstream-187
Upstream-188
Upstream-189
Matrix_129ABF1Not availableUpstream-188
Upstream-189
Upstream-556
Matrix_130TCP16Not availableUpstream-261
Matrix_134ABF1Not availableUpstream-189
Upstream-190
Matrix_145GBF4;AT5G44080Not availableUpstream-189
Upstream-190
Matrix_156POC1Not availableUpstream-189
Upstream-190
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-1275
Matrix_192FHY3/FAR1Not availableUpstream-185
Upstream-186
Upstream-189
Upstream-190
Matrix_194HYH;HY5Not availableUpstream-185
Upstream-186
Matrix_196TCP20;AT5G41030Not availableUpstream-1991
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-188
Upstream-189
Matrix_214AP1Not availableUpstream-186
Upstream-187
Matrix_216TCP16Not availableUpstream-261
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-185
Upstream-186
Upstream-189
Upstream-190
Matrix_232TCP23Not availableUpstream-260
Matrix_24POC1Not availableUpstream-184
Upstream-185
Matrix_247PIF3Not availableUpstream-188
Upstream-189
Matrix_264ATAREB1Not availableUpstream-185
Upstream-186
Upstream-188
Upstream-189
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-261
Matrix_294MEE35Not availableUpstream-261
Matrix_296GBF2Not availableUpstream-188
Upstream-189
Upstream-190
Matrix_297TCP15Not availableUpstream-260
Matrix_300bZIP68;bZIP16Not availableUpstream-188
Upstream-189
Upstream-190
Matrix_301PIL5Not availableUpstream-183
Upstream-184
Matrix_331GBF1Not availableUpstream-187
Upstream-188
Upstream-189
Upstream-190
Matrix_332SPT;ALCNot availableUpstream-189
Upstream-190
Matrix_338AP2Not availableUpstream-185
Upstream-186
Upstream-553
Matrix_339bHLH104Not availableUpstream-188
Matrix_348AT5G51910Not availableUpstream-261
Matrix_356PRR5Not availableUpstream-181
Upstream-182
Upstream-185
Upstream-186
Matrix_359FLCNot availableUpstream-186
Upstream-187
Matrix_369AT2G18300Not availableUpstream-188
Matrix_389ILR3Not availableUpstream-188
Upstream-189
Matrix_403BZR1Not availableUpstream-186
Upstream-187
Matrix_42AT2G45680Not availableUpstream-261
Matrix_438AtbZIP63Not availableUpstream-186
Matrix_443AGL15Not availableUpstream-186
Upstream-187
Matrix_466PRR5Not availableUpstream-1701
Matrix_48PINot availableUpstream-292
Matrix_480BES1Not availableUpstream-188
Upstream-189
Matrix_488ABF1Not availableUpstream-180
Upstream-181
Upstream-187
Upstream-188
Matrix_507TCP3Not availableUpstream-260
Matrix_53MYC3Not availableUpstream-190
Upstream-191
Matrix_55PIF3Not availableUpstream-187
Upstream-188
Matrix_60AT1G01260;AT5G57150Not availableUpstream-189
Upstream-190
Matrix_65POC1;PIL1Not availableUpstream-190
Matrix_7PIF4Not availableUpstream-188
Upstream-189
Upstream-190
Upstream-191
Matrix_77PRR5Not availableUpstream-186
Upstream-187
Upstream-188
Matrix_80BIM1Not availableUpstream-187
Upstream-188
Upstream-189
Upstream-190
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-190
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-190
Motif_199GCN4OSGLUB1GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expressionUpstream-1386
Upstream-1410
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-189
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-189
Upstream-190
Upstream-1276
Motif_244ABRE-like binding site motifNot availableUpstream-188
Upstream-190
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-189
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-190
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-190
Upstream-667
Upstream-1669
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-190
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-243
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-188
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-191
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-188
Upstream-191
Motif_638ABRE binding site motifNot availableUpstream-190
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-198
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-668
Upstream-669
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-188
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-192
Motif_80AP1SV40AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-1386
Upstream-1410
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-189