Matrix_104 | PI | Not available | Upstream | -187 |
| | | Upstream | -188 |
Matrix_109 | GBF3 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -190 |
Matrix_113 | ABI5 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -190 |
Matrix_120 | BEE2 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -189 |
Matrix_129 | ABF1 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -556 |
Matrix_130 | TCP16 | Not available | Upstream | -261 |
Matrix_134 | ABF1 | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_156 | POC1 | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -1275 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -185 |
| | | Upstream | -186 |
| | | Upstream | -189 |
| | | Upstream | -190 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -185 |
| | | Upstream | -186 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -1991 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_214 | AP1 | Not available | Upstream | -186 |
| | | Upstream | -187 |
Matrix_216 | TCP16 | Not available | Upstream | -261 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -185 |
| | | Upstream | -186 |
| | | Upstream | -189 |
| | | Upstream | -190 |
Matrix_232 | TCP23 | Not available | Upstream | -260 |
Matrix_24 | POC1 | Not available | Upstream | -184 |
| | | Upstream | -185 |
Matrix_247 | PIF3 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_264 | ATAREB1 | Not available | Upstream | -185 |
| | | Upstream | -186 |
| | | Upstream | -188 |
| | | Upstream | -189 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -261 |
Matrix_294 | MEE35 | Not available | Upstream | -261 |
Matrix_296 | GBF2 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -190 |
Matrix_297 | TCP15 | Not available | Upstream | -260 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -190 |
Matrix_301 | PIL5 | Not available | Upstream | -183 |
| | | Upstream | -184 |
Matrix_331 | GBF1 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -190 |
Matrix_332 | SPT;ALC | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_338 | AP2 | Not available | Upstream | -185 |
| | | Upstream | -186 |
| | | Upstream | -553 |
Matrix_339 | bHLH104 | Not available | Upstream | -188 |
Matrix_348 | AT5G51910 | Not available | Upstream | -261 |
Matrix_356 | PRR5 | Not available | Upstream | -181 |
| | | Upstream | -182 |
| | | Upstream | -185 |
| | | Upstream | -186 |
Matrix_359 | FLC | Not available | Upstream | -186 |
| | | Upstream | -187 |
Matrix_369 | AT2G18300 | Not available | Upstream | -188 |
Matrix_389 | ILR3 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_403 | BZR1 | Not available | Upstream | -186 |
| | | Upstream | -187 |
Matrix_42 | AT2G45680 | Not available | Upstream | -261 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -186 |
Matrix_443 | AGL15 | Not available | Upstream | -186 |
| | | Upstream | -187 |
Matrix_466 | PRR5 | Not available | Upstream | -1701 |
Matrix_48 | PI | Not available | Upstream | -292 |
Matrix_480 | BES1 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_488 | ABF1 | Not available | Upstream | -180 |
| | | Upstream | -181 |
| | | Upstream | -187 |
| | | Upstream | -188 |
Matrix_507 | TCP3 | Not available | Upstream | -260 |
Matrix_53 | MYC3 | Not available | Upstream | -190 |
| | | Upstream | -191 |
Matrix_55 | PIF3 | Not available | Upstream | -187 |
| | | Upstream | -188 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -190 |
Matrix_7 | PIF4 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -190 |
| | | Upstream | -191 |
Matrix_77 | PRR5 | Not available | Upstream | -186 |
| | | Upstream | -187 |
| | | Upstream | -188 |
Matrix_80 | BIM1 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -190 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -190 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -190 |
Motif_199 | GCN4OSGLUB1 | GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression | Upstream | -1386 |
| | | Upstream | -1410 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -189 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -189 |
| | | Upstream | -190 |
| | | Upstream | -1276 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -188 |
| | | Upstream | -190 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -189 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -190 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -190 |
| | | Upstream | -667 |
| | | Upstream | -1669 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -190 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -243 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -188 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -191 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -188 |
| | | Upstream | -191 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -190 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -198 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -668 |
| | | Upstream | -669 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -188 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -192 |
Motif_80 | AP1SV40 | AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -1386 |
| | | Upstream | -1410 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -189 |