View conserved binding sites


Gene
GM08G17120
Description
CTP synthase
Alias
Glyma08g17120;Glyma08g17120.1;PAC:26306396;Glyma08g17120.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-851
Matrix_146ORA47Not availableUpstream-851
Matrix_147ERF3;AT1G80580Not availableUpstream-851
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-851
Upstream-852
Matrix_224ERF1Not availableUpstream-850
Matrix_234RAP2.3Not availableUpstream-851
Matrix_25AP3Not availableUpstream-804
Matrix_252RAP2.6Not availableUpstream-851
Matrix_261ATERF-1Not availableUpstream-851
Matrix_272DEAR4Not availableUpstream-851
Matrix_287ERF2Not availableUpstream-851
Matrix_288RAP2.3Not availableUpstream-850
Matrix_295ERF1Not availableUpstream-851
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-850
Matrix_334AT3G23230Not availableUpstream-851
Upstream-852
Matrix_343AT2G33710Not availableUpstream-851
Matrix_355ERF10;ERF11Not availableUpstream-850
Matrix_360ORA59Not availableUpstream-851
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-851
Matrix_378ATERF1Not availableUpstream-851
Matrix_401MYB55Not availableUpstream-582
Matrix_406ATERF-7Not availableUpstream-849
Matrix_409DEAR3Not availableUpstream-850
Matrix_426CRF1;CRF2Not availableUpstream-851
Upstream-852
Matrix_45DRNNot availableUpstream-851
Matrix_462ATERF-8Not availableUpstream-849
Matrix_484ATERF13Not availableUpstream-851
Matrix_493AT1G22985;AT1G71130Not availableUpstream-851
Matrix_50ATERF14;AT5G43410Not availableUpstream-850
Matrix_506DRNL;ATERF-4Not availableUpstream-851
Upstream-852
Matrix_517ERF12Not availableUpstream-851
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-851
Upstream-852
Matrix_91CRF3Not availableUpstream-851
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-951
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-1962
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-465
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-467
Motif_297Bellringer/replumless/pennywise BS1 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-963
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-236
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-851
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-1044
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-813
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-963
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-109
Upstream-141
Upstream-142
Upstream-410
Upstream-412
Upstream-955
Upstream-956
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-237
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-813
Upstream-815
Upstream-817
Upstream-819
Upstream-821