Matrix_101 | ERF5 | Not available | Upstream | -851 |
Matrix_146 | ORA47 | Not available | Upstream | -851 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -851 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -851 |
| | | Upstream | -852 |
Matrix_224 | ERF1 | Not available | Upstream | -850 |
Matrix_234 | RAP2.3 | Not available | Upstream | -851 |
Matrix_25 | AP3 | Not available | Upstream | -804 |
Matrix_252 | RAP2.6 | Not available | Upstream | -851 |
Matrix_261 | ATERF-1 | Not available | Upstream | -851 |
Matrix_272 | DEAR4 | Not available | Upstream | -851 |
Matrix_287 | ERF2 | Not available | Upstream | -851 |
Matrix_288 | RAP2.3 | Not available | Upstream | -850 |
Matrix_295 | ERF1 | Not available | Upstream | -851 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -850 |
Matrix_334 | AT3G23230 | Not available | Upstream | -851 |
| | | Upstream | -852 |
Matrix_343 | AT2G33710 | Not available | Upstream | -851 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -850 |
Matrix_360 | ORA59 | Not available | Upstream | -851 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -851 |
Matrix_378 | ATERF1 | Not available | Upstream | -851 |
Matrix_401 | MYB55 | Not available | Upstream | -582 |
Matrix_406 | ATERF-7 | Not available | Upstream | -849 |
Matrix_409 | DEAR3 | Not available | Upstream | -850 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -851 |
| | | Upstream | -852 |
Matrix_45 | DRN | Not available | Upstream | -851 |
Matrix_462 | ATERF-8 | Not available | Upstream | -849 |
Matrix_484 | ATERF13 | Not available | Upstream | -851 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -851 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -850 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -851 |
| | | Upstream | -852 |
Matrix_517 | ERF12 | Not available | Upstream | -851 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -851 |
| | | Upstream | -852 |
Matrix_91 | CRF3 | Not available | Upstream | -851 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -951 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -1962 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -465 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -467 |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Upstream | -963 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -236 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -851 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -1044 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -813 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -963 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -109 |
| | | Upstream | -141 |
| | | Upstream | -142 |
| | | Upstream | -410 |
| | | Upstream | -412 |
| | | Upstream | -955 |
| | | Upstream | -956 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -237 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -813 |
| | | Upstream | -815 |
| | | Upstream | -817 |
| | | Upstream | -819 |
| | | Upstream | -821 |