Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -217 |
| | | Upstream | -218 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -215 |
| | | Upstream | -216 |
Matrix_129 | ABF1 | Not available | Upstream | -218 |
| | | Upstream | -219 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -219 |
| | | Upstream | -220 |
Matrix_156 | POC1 | Not available | Upstream | -217 |
| | | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -220 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -218 |
Matrix_214 | AP1 | Not available | Upstream | -216 |
| | | Upstream | -217 |
Matrix_233 | MYC3 | Not available | Upstream | -219 |
| | | Upstream | -220 |
Matrix_247 | PIF3 | Not available | Upstream | -218 |
| | | Upstream | -219 |
Matrix_296 | GBF2 | Not available | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -220 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -220 |
Matrix_301 | PIL5 | Not available | Upstream | -219 |
| | | Upstream | -220 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -216 |
| | | Upstream | -217 |
Matrix_332 | SPT;ALC | Not available | Upstream | -218 |
| | | Upstream | -219 |
| | | Upstream | -220 |
Matrix_345 | POC1 | Not available | Upstream | -215 |
| | | Upstream | -216 |
Matrix_359 | FLC | Not available | Upstream | -216 |
| | | Upstream | -217 |
Matrix_403 | BZR1 | Not available | Upstream | -216 |
| | | Upstream | -217 |
Matrix_443 | AGL15 | Not available | Upstream | -216 |
| | | Upstream | -217 |
Matrix_55 | PIF3 | Not available | Upstream | -217 |
| | | Upstream | -218 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -219 |
| | | Upstream | -220 |
Matrix_64 | PIF5 | Not available | Upstream | -219 |
| | | Upstream | -220 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -219 |
| | | Upstream | -220 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -136 |
Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | Upstream | -229 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -81 |
Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | Upstream | -236 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -220 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -175 |
| | | Upstream | -220 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -219 |
| | | Upstream | -220 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -218 |
| | | Upstream | -220 |
Motif_332 | SV40COREENHAN | SV40 core enhancer; Similar sequences found in rbcS genes | Upstream | -235 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -220 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -219 |
| | | Upstream | -220 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -219 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Upstream | -159 |
| | | Upstream | -577 |
| | | Upstream | -681 |
| | | Upstream | -823 |
| | | Upstream | -1562 |
| | | Upstream | -1784 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -971 |