View conserved binding sites


Gene
GM08G03780
Description
linked kinase-associated serine/threonine phosphatase 2C
Alias
Glyma08g03780;Glyma08g03780.1;PAC:26307218;Glyma08g03780.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableIntron1320
Intron842
Intron769
Upstream-101
Upstream-102
Matrix_109GBF3Not availableUpstream-383
Matrix_111ABF3Not availableIntron840
Upstream-103
Upstream-104
Matrix_113ABI5Not availableIntron1318
Intron840
Intron767
Upstream-101
Upstream-102
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-381
Upstream-1601
Matrix_122ABF1;AREB2Not availableIntron1319
Intron769
Upstream-101
Upstream-102
Upstream-1604
Matrix_129ABF1Not availableIntron1319
Intron768
Upstream-102
Upstream-103
Upstream-1605
Matrix_134ABF1Not availableUpstream-102
Upstream-103
Upstream-1606
Matrix_145GBF4;AT5G44080Not availableIntron1318
Intron767
Upstream-1606
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-224
Matrix_156POC1Not availableUpstream-1606
Matrix_192FHY3/FAR1Not availableIntron1318
Intron840
Intron767
Upstream-99
Upstream-100
Matrix_194HYH;HY5Not availableIntron1322
Intron844
Upstream-99
Upstream-100
Upstream-381
Matrix_214AP1Not availableIntron1321
Intron843
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron1318
Intron767
Upstream-99
Upstream-100
Matrix_232TCP23Not availableUpstream-410
Matrix_24POC1Not availableUpstream-224
Upstream-380
Matrix_247PIF3Not availableUpstream-384
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-224
Upstream-225
Matrix_264ATAREB1Not availableIntron1319
Intron841
Upstream-99
Upstream-100
Upstream-102
Upstream-103
Upstream-1602
Matrix_281TCP13Not availableIntron4632
Matrix_296GBF2Not availableUpstream-384
Upstream-385
Matrix_297TCP15Not availableIntron3883
Upstream-410
Matrix_300bZIP68;bZIP16Not availableIntron1319
Intron1318
Intron767
Upstream-384
Upstream-385
Matrix_301PIL5Not availableUpstream-97
Upstream-98
Upstream-229
Upstream-379
Upstream-1600
Matrix_332SPT;ALCNot availableUpstream-1606
Matrix_338AP2Not availableIntron1322
Intron844
Upstream-99
Upstream-100
Upstream-1309
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-227
Matrix_345POC1Not availableUpstream-381
Matrix_356PRR5Not availableIntron1326
Intron848
Upstream-95
Upstream-96
Upstream-100
Upstream-1602
Matrix_403BZR1Not availableIntron1321
Intron770
Upstream-100
Upstream-101
Upstream-1603
Matrix_414AGL15Not availableUpstream-79
Upstream-80
Matrix_42AT2G45680Not availableUpstream-409
Matrix_438AtbZIP63Not availableUpstream-323
Matrix_443AGL15Not availableIntron1321
Intron843
Intron770
Upstream-100
Upstream-101
Matrix_467RAV1Not availableUpstream-227
Matrix_477RAV1Not availableUpstream-227
Matrix_48PINot availableUpstream-85
Matrix_480BES1Not availableUpstream-101
Upstream-102
Matrix_488ABF1Not availableUpstream-219
Upstream-220
Matrix_53MYC3Not availableUpstream-100
Upstream-101
Upstream-1607
Matrix_55PIF3Not availableUpstream-1604
Matrix_7PIF4Not availableIntron1317
Intron766
Upstream-102
Upstream-103
Upstream-1607
Matrix_77PRR5Not availableUpstream-822
Upstream-1603
Matrix_94TCP5Not availableIntron4632
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceDownstream5706
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-104
Upstream-1606
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisDownstream5711
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-104
Upstream-229
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-103
Upstream-104
Upstream-823
Upstream-824
Upstream-1605
Upstream-1606
Motif_244ABRE-like binding site motifNot availableUpstream-102
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-103
Upstream-104
Upstream-284
Upstream-771
Upstream-843
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-104
Upstream-326
Upstream-1242
Upstream-1606
Motif_393AUXREPSIAA4AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristemsUpstream-133
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-1606
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-325
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-106
Upstream-328
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-229
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-72
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-325
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-102
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-50
Upstream-69
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-50
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-102