| Matrix_101 | ERF5 | Not available | Upstream | -19 |
| Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -17 |
| Matrix_119 | RRTF1 | Not available | Upstream | -18 |
| Matrix_138 | RRTF1 | Not available | Upstream | -18 |
| Matrix_146 | ORA47 | Not available | Upstream | -19 |
| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -19 |
| Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -17 |
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -20 |
| Matrix_169 | E2F1 | Not available | Upstream | -33 |
| | | Upstream | -37 |
| Matrix_171 | LBD3;LBD4 | Not available | Upstream | -18 |
| Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -35 |
| | | Upstream | -37 |
| Matrix_186 | FHY3 | Not available | Upstream | -34 |
| | | Upstream | -36 |
| Matrix_190 | ATERF1 | Not available | Upstream | -16 |
| | | Upstream | -17 |
| | | Upstream | -20 |
| Matrix_224 | ERF1 | Not available | Upstream | -15 |
| | | Upstream | -18 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -19 |
| Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -20 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -16 |
| | | Upstream | -19 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -19 |
| Matrix_272 | DEAR4 | Not available | Upstream | -19 |
| Matrix_277 | RAP2.6 | Not available | Upstream | -18 |
| Matrix_287 | ERF2 | Not available | Upstream | -19 |
| Matrix_288 | RAP2.3 | Not available | Upstream | -18 |
| Matrix_295 | ERF1 | Not available | Upstream | -19 |
| Matrix_321 | HRD | Not available | Upstream | -19 |
| Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -18 |
| Matrix_334 | AT3G23230 | Not available | Upstream | -20 |
| Matrix_343 | AT2G33710 | Not available | Upstream | -16 |
| | | Upstream | -19 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -18 |
| Matrix_360 | ORA59 | Not available | Upstream | -19 |
| Matrix_363 | RAP2.3 | Not available | Upstream | -18 |
| Matrix_373 | E2FE | Not available | Upstream | -36 |
| Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -19 |
| Matrix_378 | ATERF1 | Not available | Upstream | -16 |
| | | Upstream | -19 |
| Matrix_396 | AP3 | Not available | Upstream | -650 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -17 |
| Matrix_409 | DEAR3 | Not available | Upstream | -18 |
| Matrix_426 | CRF1;CRF2 | Not available | Upstream | -20 |
| Matrix_45 | DRN | Not available | Upstream | -19 |
| Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -18 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -17 |
| Matrix_473 | RRTF1 | Not available | Upstream | -16 |
| | | Upstream | -19 |
| Matrix_484 | ATERF13 | Not available | Upstream | -19 |
| Matrix_488 | ABF1 | Not available | Upstream | -28 |
| Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -19 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -18 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -20 |
| Matrix_517 | ERF12 | Not available | Upstream | -19 |
| Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -15 |
| | | Upstream | -18 |
| Matrix_84 | AtGRF6 | Not available | Upstream | -21 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -20 |
| Matrix_91 | CRF3 | Not available | Upstream | -19 |
| Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -650 |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -20 |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -37 |
| Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -13 |
| Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -650 |
| Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | Upstream | -580 |
| | | Upstream | -1737 |
Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench