Matrix_106 | AT5G47390 | Not available | Upstream | -495 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Downstream | 1090 |
| | | Downstream | 1098 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Downstream | 1088 |
| | | Downstream | 1126 |
Matrix_120 | BEE2 | Not available | Downstream | 1091 |
Matrix_130 | TCP16 | Not available | Downstream | 1178 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Downstream | 1091 |
| | | Downstream | 1092 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -299 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Downstream | 1087 |
| | | Downstream | 1095 |
Matrix_153 | AP2 | Not available | Downstream | 1090 |
| | | Downstream | 1098 |
Matrix_156 | POC1 | Not available | Downstream | 1098 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Downstream | 1091 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -296 |
| | | Downstream | 1122 |
| | | Downstream | 1174 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Downstream | 1091 |
Matrix_233 | MYC3 | Not available | Downstream | 1092 |
Matrix_24 | POC1 | Not available | Downstream | 1087 |
| | | Downstream | 1095 |
Matrix_294 | MEE35 | Not available | Upstream | -1249 |
Matrix_297 | TCP15 | Not available | Upstream | -297 |
| | | Downstream | 1123 |
| | | Downstream | 1175 |
Matrix_301 | PIL5 | Not available | Downstream | 1086 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1443 |
Matrix_316 | WRKY15;WRKY39;WRKY7;WRKY74 | Not available | Downstream | 1149 |
Matrix_320 | MYC4 | Not available | Downstream | 1092 |
Matrix_323 | BIM3 | Not available | Downstream | 1091 |
| | | Downstream | 1099 |
Matrix_325 | WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2 | Not available | Downstream | 1149 |
Matrix_330 | MYC2;TT8 | Not available | Downstream | 1091 |
| | | Downstream | 1099 |
Matrix_332 | SPT;ALC | Not available | Downstream | 1092 |
| | | Downstream | 1099 |
Matrix_339 | bHLH104 | Not available | Downstream | 1091 |
Matrix_345 | POC1 | Not available | Downstream | 1126 |
Matrix_348 | AT5G51910 | Not available | Upstream | -299 |
| | | Upstream | -298 |
| | | Downstream | 1176 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Downstream | 1092 |
| | | Downstream | 1100 |
Matrix_369 | AT2G18300 | Not available | Downstream | 1089 |
| | | Downstream | 1091 |
| | | Downstream | 1097 |
Matrix_389 | ILR3 | Not available | Downstream | 1091 |
Matrix_42 | AT2G45680 | Not available | Upstream | -299 |
| | | Upstream | -298 |
Matrix_437 | MYC2 | Not available | Downstream | 1092 |
Matrix_449 | BIM2 | Not available | Downstream | 1091 |
| | | Downstream | 1099 |
Matrix_465 | MYC4 | Not available | Downstream | 1091 |
| | | Downstream | 1099 |
Matrix_476 | bHLH115;bHLH34 | Not available | Downstream | 1092 |
Matrix_480 | BES1 | Not available | Downstream | 1091 |
| | | Downstream | 1099 |
Matrix_500 | WRKY43 | Not available | Downstream | 1149 |
Matrix_507 | TCP3 | Not available | Upstream | -300 |
| | | Downstream | 1126 |
Matrix_53 | MYC3 | Not available | Downstream | 1093 |
| | | Downstream | 1097 |
Matrix_64 | PIF5 | Not available | Downstream | 1100 |
Matrix_80 | BIM1 | Not available | Downstream | 1090 |
| | | Downstream | 1092 |
| | | Downstream | 1098 |
| | | Downstream | 1100 |
Matrix_82 | TCP17 | Not available | Upstream | -1249 |
| | | Downstream | 1127 |
Matrix_90 | BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915 | Not available | Downstream | 1092 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -186 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -289 |
| | | Downstream | 1092 |
| | | Downstream | 1094 |
| | | Downstream | 1100 |
| | | Downstream | 1102 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Downstream | 1093 |
| | | Downstream | 1101 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 1093 |
| | | Downstream | 1101 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Downstream | 1092 |
| | | Downstream | 1093 |
| | | Downstream | 1100 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Downstream | 1150 |
Motif_33 | ACGTCBOX | C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site | Downstream | 1064 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Downstream | 1093 |
| | | Downstream | 1101 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 1095 |
| | | Downstream | 1099 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Downstream | 1096 |
| | | Downstream | 1097 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Downstream | 1094 |
| | | Downstream | 1098 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -298 |