View conserved binding sites


Gene
GM07G03250
Description
Clustered mitochondria protein homolog
Alias
Glyma07g03250;Glyma07g03250.2;PAC:26350524;Glyma07g03250.2
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-486
Upstream-487
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-486
Upstream-487
Matrix_109GBF3Not availableUpstream-486
Upstream-487
Upstream-488
Upstream-489
Matrix_113ABI5Not availableUpstream-486
Upstream-487
Upstream-488
Upstream-489
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-483
Upstream-484
Upstream-485
Matrix_120BEE2Not availableUpstream-487
Upstream-488
Matrix_122ABF1;AREB2Not availableUpstream-486
Upstream-487
Upstream-488
Matrix_129ABF1Not availableUpstream-487
Upstream-488
Matrix_134ABF1Not availableUpstream-487
Upstream-488
Matrix_14ZCW32;AT5G62610Not availableUpstream-487
Upstream-488
Upstream-489
Matrix_145GBF4;AT5G44080Not availableUpstream-488
Upstream-489
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-483
Matrix_156POC1Not availableUpstream-486
Upstream-487
Upstream-488
Upstream-489
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-487
Upstream-488
Matrix_172BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-279
Upstream-280
Matrix_192FHY3/FAR1Not availableUpstream-484
Upstream-485
Upstream-488
Upstream-489
Matrix_194HYH;HY5Not availableUpstream-484
Upstream-485
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-487
Upstream-488
Matrix_214AP1Not availableUpstream-485
Upstream-486
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-484
Upstream-485
Upstream-488
Upstream-489
Matrix_233MYC3Not availableUpstream-488
Upstream-489
Matrix_247PIF3Not availableUpstream-487
Upstream-488
Matrix_259AT1G50680;AT1G51120Not availableUpstream-487
Upstream-488
Matrix_264ATAREB1Not availableUpstream-484
Upstream-485
Upstream-487
Upstream-488
Matrix_296GBF2Not availableUpstream-487
Upstream-488
Upstream-489
Matrix_300bZIP68;bZIP16Not availableUpstream-487
Upstream-488
Upstream-489
Matrix_301PIL5Not availableUpstream-482
Matrix_323BIM3Not availableUpstream-487
Matrix_330MYC2;TT8Not availableUpstream-487
Upstream-488
Matrix_331GBF1Not availableUpstream-486
Upstream-487
Upstream-488
Upstream-489
Matrix_332SPT;ALCNot availableUpstream-487
Upstream-488
Upstream-489
Matrix_338AP2Not availableUpstream-484
Upstream-485
Matrix_339bHLH104Not availableUpstream-487
Upstream-488
Matrix_345POC1Not availableUpstream-483
Upstream-484
Upstream-485
Matrix_356PRR5Not availableUpstream-480
Upstream-484
Matrix_369AT2G18300Not availableUpstream-487
Matrix_389ILR3Not availableUpstream-487
Upstream-488
Matrix_403BZR1Not availableUpstream-485
Upstream-486
Matrix_415WRKY27Not availableUpstream-287
Matrix_438AtbZIP63Not availableUpstream-487
Matrix_443AGL15Not availableUpstream-485
Upstream-486
Matrix_449BIM2Not availableUpstream-487
Matrix_465MYC4Not availableUpstream-487
Upstream-488
Matrix_48PINot availableIntron7527
Matrix_488ABF1Not availableUpstream-479
Upstream-486
Matrix_53MYC3Not availableUpstream-489
Matrix_55PIF3Not availableUpstream-486
Upstream-487
Matrix_60AT1G01260;AT5G57150Not availableUpstream-488
Matrix_64PIF5Not availableUpstream-488
Upstream-489
Matrix_65POC1;PIL1Not availableUpstream-488
Upstream-489
Matrix_7PIF4Not availableUpstream-487
Upstream-488
Upstream-489
Upstream-490
Matrix_77PRR5Not availableUpstream-485
Upstream-486
Matrix_80BIM1Not availableUpstream-486
Upstream-487
Upstream-488
Upstream-489
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-300
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-363
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-518
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-1806
Upstream-1888
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-531
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-305
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-282
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-281
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-489
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-282
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-474
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-489
Upstream-531
Upstream-547
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-487
Upstream-488
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-488
Upstream-489
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-474
Motif_244ABRE-like binding site motifNot availableUpstream-487
Upstream-489
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-470
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-487
Upstream-489
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-487
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream10412
Upstream-276
Upstream-355
Upstream-527
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-474
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-489
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-290
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream10407
Upstream-521
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-363
Upstream-365
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-531
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-488
Upstream-489
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-488
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-323
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-346
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-487
Upstream-490
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-304
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-290
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream10406
Upstream-521
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-487
Upstream-490
Motif_638ABRE binding site motifNot availableUpstream-487
Upstream-489
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-486
Upstream-490
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream10411
Upstream-306
Upstream-465
Upstream-526
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream10406
Upstream-521
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-306
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron7516
Intron7514
Intron7512
Intron7510
Upstream-363
Upstream-365
Upstream-367
Upstream-369
Upstream-371
Upstream-373
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-474