Matrix_104 | PI | Not available | Upstream | -486 |
| | | Upstream | -487 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -486 |
| | | Upstream | -487 |
Matrix_109 | GBF3 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_113 | ABI5 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -483 |
| | | Upstream | -484 |
| | | Upstream | -485 |
Matrix_120 | BEE2 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -488 |
Matrix_129 | ABF1 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_134 | ABF1 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -483 |
Matrix_156 | POC1 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_172 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -279 |
| | | Upstream | -280 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -484 |
| | | Upstream | -485 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -484 |
| | | Upstream | -485 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_214 | AP1 | Not available | Upstream | -485 |
| | | Upstream | -486 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -484 |
| | | Upstream | -485 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_233 | MYC3 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_247 | PIF3 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_264 | ATAREB1 | Not available | Upstream | -484 |
| | | Upstream | -485 |
| | | Upstream | -487 |
| | | Upstream | -488 |
Matrix_296 | GBF2 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_301 | PIL5 | Not available | Upstream | -482 |
Matrix_323 | BIM3 | Not available | Upstream | -487 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_331 | GBF1 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_332 | SPT;ALC | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Matrix_338 | AP2 | Not available | Upstream | -484 |
| | | Upstream | -485 |
Matrix_339 | bHLH104 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_345 | POC1 | Not available | Upstream | -483 |
| | | Upstream | -484 |
| | | Upstream | -485 |
Matrix_356 | PRR5 | Not available | Upstream | -480 |
| | | Upstream | -484 |
Matrix_369 | AT2G18300 | Not available | Upstream | -487 |
Matrix_389 | ILR3 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_403 | BZR1 | Not available | Upstream | -485 |
| | | Upstream | -486 |
Matrix_415 | WRKY27 | Not available | Upstream | -287 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -487 |
Matrix_443 | AGL15 | Not available | Upstream | -485 |
| | | Upstream | -486 |
Matrix_449 | BIM2 | Not available | Upstream | -487 |
Matrix_465 | MYC4 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_48 | PI | Not available | Intron | 7527 |
Matrix_488 | ABF1 | Not available | Upstream | -479 |
| | | Upstream | -486 |
Matrix_53 | MYC3 | Not available | Upstream | -489 |
Matrix_55 | PIF3 | Not available | Upstream | -486 |
| | | Upstream | -487 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -488 |
Matrix_64 | PIF5 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_7 | PIF4 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
| | | Upstream | -490 |
Matrix_77 | PRR5 | Not available | Upstream | -485 |
| | | Upstream | -486 |
Matrix_80 | BIM1 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Upstream | -300 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -363 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -518 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -1806 |
| | | Upstream | -1888 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -531 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -305 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -282 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -281 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -489 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -282 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -474 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -489 |
| | | Upstream | -531 |
| | | Upstream | -547 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -487 |
| | | Upstream | -488 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -488 |
| | | Upstream | -489 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -474 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -487 |
| | | Upstream | -489 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -470 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -487 |
| | | Upstream | -489 |
Motif_300 | ACGTROOT1;HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA | Upstream | -487 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 10412 |
| | | Upstream | -276 |
| | | Upstream | -355 |
| | | Upstream | -527 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -474 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -489 |
Motif_383 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -290 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Downstream | 10407 |
| | | Upstream | -521 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -363 |
| | | Upstream | -365 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -531 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -488 |
| | | Upstream | -489 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -488 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -323 |
Motif_530 | CPBCSPOR | The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene | Upstream | -346 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -487 |
| | | Upstream | -490 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -304 |
Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -290 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 10406 |
| | | Upstream | -521 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -487 |
| | | Upstream | -490 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -487 |
| | | Upstream | -489 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -486 |
| | | Upstream | -490 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 10411 |
| | | Upstream | -306 |
| | | Upstream | -465 |
| | | Upstream | -526 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 10406 |
| | | Upstream | -521 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -306 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 7516 |
| | | Intron | 7514 |
| | | Intron | 7512 |
| | | Intron | 7510 |
| | | Upstream | -363 |
| | | Upstream | -365 |
| | | Upstream | -367 |
| | | Upstream | -369 |
| | | Upstream | -371 |
| | | Upstream | -373 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -474 |