Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -173 |
Matrix_181 | Dof5.7 | Not available | Upstream | -425 |
| | | Upstream | -426 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Intron | 2069 |
| | | Intron | 955 |
| | | Intron | 238 |
Matrix_315 | MYB111 | Not available | Intron | 967 |
| | | Intron | 966 |
Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Intron | 966 |
| | | Intron | 965 |
Matrix_414 | AGL15 | Not available | Upstream | -433 |
Matrix_48 | PI | Not available | Upstream | -432 |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Upstream | -404 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -2 |
| | | Upstream | -4 |
| | | Upstream | -6 |
| | | Upstream | -8 |
| | | Upstream | -10 |
| | | Upstream | -12 |
| | | Upstream | -14 |
| | | Upstream | -16 |
| | | Upstream | -18 |
| | | Upstream | -20 |
| | | Upstream | -22 |
| | | Upstream | -24 |
| | | Upstream | -26 |
| | | Upstream | -28 |
| | | Upstream | -30 |
| | | Upstream | -32 |
| | | Upstream | -34 |
| | | Upstream | -36 |
| | | Upstream | -38 |
| | | Upstream | -40 |
| | | Upstream | -42 |
| | | Upstream | -44 |
| | | Upstream | -46 |
| | | Upstream | -48 |
| | | Upstream | -50 |
| | | Upstream | -52 |
| | | Upstream | -54 |
| | | Upstream | -56 |
| | | Upstream | -58 |
| | | Upstream | -60 |
| | | Upstream | -62 |
| | | Upstream | -64 |
| | | Upstream | -66 |
| | | Upstream | -68 |
| | | Upstream | -70 |
| | | Upstream | -72 |
| | | Upstream | -74 |
| | | Upstream | -76 |
| | | Upstream | -78 |
| | | Upstream | -80 |
| | | Upstream | -82 |
| | | Upstream | -84 |
| | | Upstream | -86 |
| | | Upstream | -88 |
| | | Upstream | -90 |
| | | Upstream | -92 |
| | | Upstream | -94 |
| | | Upstream | -96 |
| | | Upstream | -98 |
| | | Upstream | -100 |
| | | Upstream | -102 |
| | | Upstream | -104 |
| | | Upstream | -106 |
| | | Upstream | -108 |
| | | Upstream | -110 |
| | | Upstream | -112 |
| | | Upstream | -114 |
| | | Upstream | -116 |
| | | Upstream | -118 |
| | | Upstream | -120 |
| | | Upstream | -122 |
| | | Upstream | -124 |
| | | Upstream | -126 |
| | | Upstream | -128 |
| | | Upstream | -130 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Intron | 965 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Intron | 965 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Intron | 964 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Upstream | -386 |
Motif_419 | MYB4 binding site motif | Not available | Intron | 965 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -2 |
| | | Upstream | -4 |
| | | Upstream | -6 |
| | | Upstream | -8 |
| | | Upstream | -10 |
| | | Upstream | -12 |
| | | Upstream | -14 |
| | | Upstream | -16 |
| | | Upstream | -18 |
| | | Upstream | -20 |
| | | Upstream | -22 |
| | | Upstream | -24 |
| | | Upstream | -26 |
| | | Upstream | -28 |
| | | Upstream | -30 |
| | | Upstream | -32 |
| | | Upstream | -34 |
| | | Upstream | -36 |
| | | Upstream | -38 |
| | | Upstream | -40 |
| | | Upstream | -42 |
| | | Upstream | -44 |
| | | Upstream | -46 |
| | | Upstream | -48 |
| | | Upstream | -50 |
| | | Upstream | -52 |
| | | Upstream | -54 |
| | | Upstream | -56 |
| | | Upstream | -58 |
| | | Upstream | -60 |
| | | Upstream | -62 |
| | | Upstream | -64 |
| | | Upstream | -66 |
| | | Upstream | -68 |
| | | Upstream | -70 |
| | | Upstream | -72 |
| | | Upstream | -74 |
| | | Upstream | -76 |
| | | Upstream | -78 |
| | | Upstream | -80 |
| | | Upstream | -82 |
| | | Upstream | -84 |
| | | Upstream | -86 |
| | | Upstream | -88 |
| | | Upstream | -90 |
| | | Upstream | -92 |
| | | Upstream | -94 |
| | | Upstream | -96 |
| | | Upstream | -98 |
| | | Upstream | -100 |
| | | Upstream | -102 |
| | | Upstream | -104 |
| | | Upstream | -106 |
| | | Upstream | -108 |
| | | Upstream | -110 |
| | | Upstream | -112 |
| | | Upstream | -114 |
| | | Upstream | -116 |
| | | Upstream | -118 |
| | | Upstream | -120 |
| | | Upstream | -122 |
| | | Upstream | -124 |
| | | Upstream | -126 |
| | | Upstream | -128 |
| | | Upstream | -130 |
| | | Upstream | -132 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Intron | 966 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -386 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -424 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Intron | 966 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -386 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 163 |
| | | Intron | 161 |
| | | Upstream | -2 |
| | | Upstream | -4 |
| | | Upstream | -6 |
| | | Upstream | -8 |
| | | Upstream | -10 |
| | | Upstream | -12 |
| | | Upstream | -14 |
| | | Upstream | -16 |
| | | Upstream | -18 |
| | | Upstream | -20 |
| | | Upstream | -22 |
| | | Upstream | -24 |
| | | Upstream | -26 |
| | | Upstream | -28 |
| | | Upstream | -30 |
| | | Upstream | -32 |
| | | Upstream | -34 |
| | | Upstream | -36 |
| | | Upstream | -38 |
| | | Upstream | -40 |
| | | Upstream | -42 |
| | | Upstream | -44 |
| | | Upstream | -46 |
| | | Upstream | -48 |
| | | Upstream | -50 |
| | | Upstream | -52 |
| | | Upstream | -54 |
| | | Upstream | -56 |
| | | Upstream | -58 |
| | | Upstream | -60 |
| | | Upstream | -62 |
| | | Upstream | -64 |
| | | Upstream | -66 |
| | | Upstream | -68 |
| | | Upstream | -70 |
| | | Upstream | -72 |
| | | Upstream | -74 |
| | | Upstream | -76 |
| | | Upstream | -78 |
| | | Upstream | -80 |
| | | Upstream | -82 |
| | | Upstream | -84 |
| | | Upstream | -86 |
| | | Upstream | -88 |
| | | Upstream | -90 |
| | | Upstream | -92 |
| | | Upstream | -94 |
| | | Upstream | -96 |
| | | Upstream | -98 |
| | | Upstream | -100 |
| | | Upstream | -102 |
| | | Upstream | -104 |
| | | Upstream | -106 |
| | | Upstream | -108 |
| | | Upstream | -110 |
| | | Upstream | -112 |
| | | Upstream | -114 |
| | | Upstream | -116 |
| | | Upstream | -118 |
| | | Upstream | -120 |
| | | Upstream | -122 |
| | | Upstream | -124 |
| | | Upstream | -126 |
| | | Upstream | -128 |
| | | Upstream | -130 |
| | | Upstream | -132 |
| | | Upstream | -134 |
| | | Upstream | -136 |
| | | Upstream | -138 |