View conserved binding sites


Gene
GM06G20160
Description
Pentatricopeptide repeat-containing protein
Alias
Glyma06g20160;Glyma06g20160.1;PAC:26300225;Glyma06g20160.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-63
Upstream-66
Matrix_115AGL15Not availableUpstream-750
Upstream-913
Matrix_119RRTF1Not availableUpstream-65
Matrix_122ABF1;AREB2Not availableUpstream-534
Matrix_138RRTF1Not availableUpstream-65
Matrix_146ORA47Not availableUpstream-66
Matrix_190ATERF1Not availableUpstream-63
Upstream-64
Upstream-65
Upstream-66
Upstream-67
Upstream-68
Matrix_224ERF1Not availableUpstream-65
Upstream-66
Matrix_234RAP2.3Not availableUpstream-66
Upstream-67
Matrix_252RAP2.6Not availableUpstream-66
Upstream-67
Upstream-949
Matrix_261ATERF-1Not availableUpstream-63
Upstream-66
Matrix_272DEAR4Not availableUpstream-66
Upstream-67
Matrix_277RAP2.6Not availableUpstream-65
Matrix_287ERF2Not availableUpstream-66
Matrix_288RAP2.3Not availableUpstream-65
Matrix_295ERF1Not availableUpstream-66
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-65
Upstream-66
Upstream-945
Matrix_334AT3G23230Not availableUpstream-67
Upstream-68
Upstream-947
Matrix_343AT2G33710Not availableUpstream-63
Upstream-64
Upstream-66
Upstream-67
Upstream-946
Matrix_355ERF10;ERF11Not availableUpstream-65
Matrix_356PRR5Not availableUpstream-532
Matrix_360ORA59Not availableUpstream-66
Matrix_363RAP2.3Not availableUpstream-65
Upstream-66
Matrix_374AT5G07580;AT5G61590Not availableUpstream-66
Matrix_378ATERF1Not availableUpstream-66
Upstream-67
Matrix_394DREB_UNot availableUpstream-945
Matrix_406ATERF-7Not availableUpstream-64
Matrix_409DEAR3Not availableUpstream-62
Matrix_416ASL5Not availableUpstream-63
Matrix_426CRF1;CRF2Not availableUpstream-67
Upstream-68
Upstream-947
Matrix_462ATERF-8Not availableUpstream-64
Matrix_473RRTF1Not availableUpstream-66
Matrix_484ATERF13Not availableUpstream-66
Matrix_488ABF1Not availableUpstream-758
Matrix_493AT1G22985;AT1G71130Not availableUpstream-66
Matrix_50ATERF14;AT5G43410Not availableUpstream-65
Matrix_506DRNL;ATERF-4Not availableUpstream-947
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-62
Upstream-63
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-67
Matrix_91CRF3Not availableUpstream-63
Upstream-66
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-55
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-67
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-67
Motif_402AtTINY2Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thalianaUpstream-65
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-79
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-66
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3173
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3173
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-1165