View conserved binding sites


Gene
GM06G15540
Description
center subunit N, chloroplastic
Alias
Glyma06g15540;Glyma06g15540.1;PAC:26299120;Glyma06g15540.1
Binding siteNameDescriptionLocationPosition
Matrix_106AT5G47390Not availableUpstream-167
Upstream-168
Matrix_196TCP20;AT5G41030Not availableUpstream-266
Matrix_271AT3G16350Not availableUpstream-167
Upstream-168
Matrix_348AT5G51910Not availableUpstream-264
Matrix_42AT2G45680Not availableUpstream-264
Matrix_6AT1G70000Not availableUpstream-167
Upstream-168
Matrix_77PRR5Not availableUpstream-160
Matrix_87AT1G19000Not availableUpstream-166
Upstream-167
Matrix_9AT5G04760Not availableUpstream-168
Upstream-169
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Upstream-166
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-170
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-169
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-170
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-167
Motif_347OPAQUE2ZMB32opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)Upstream-115
Motif_464ARR1;ARR2Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activatorsUpstream-149
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-164
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-199
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseUpstream-167
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-823
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-168