Matrix_101 | ERF5 | Not available | Upstream | -224 |
Matrix_109 | GBF3 | Not available | Upstream | -391 |
| | | Upstream | -392 |
| | | Upstream | -536 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -223 |
| | | Upstream | -224 |
Matrix_113 | ABI5 | Not available | Upstream | -391 |
| | | Upstream | -392 |
Matrix_119 | RRTF1 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_130 | TCP16 | Not available | Upstream | -387 |
| | | Upstream | -388 |
Matrix_135 | ABI3 | Not available | Upstream | -505 |
Matrix_138 | RRTF1 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -387 |
| | | Upstream | -388 |
Matrix_146 | ORA47 | Not available | Upstream | -224 |
| | | Upstream | -225 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_151 | ASIL1 | Not available | Upstream | -225 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_156 | POC1 | Not available | Upstream | -391 |
| | | Upstream | -392 |
Matrix_190 | ATERF1 | Not available | Upstream | -223 |
| | | Upstream | -224 |
| | | Upstream | -225 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -385 |
| | | Upstream | -386 |
| | | Upstream | -478 |
| | | Upstream | -530 |
| | | Upstream | -531 |
Matrix_216 | TCP16 | Not available | Upstream | -387 |
| | | Upstream | -388 |
Matrix_224 | ERF1 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_231 | HDG2;HDG3;ATML1;HB-7 | Not available | Intron | 3481 |
Matrix_232 | TCP23 | Not available | Upstream | -479 |
| | | Upstream | -529 |
| | | Upstream | -530 |
Matrix_234 | RAP2.3 | Not available | Upstream | -223 |
| | | Upstream | -224 |
| | | Upstream | -225 |
Matrix_24 | POC1 | Not available | Upstream | -389 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -225 |
Matrix_247 | PIF3 | Not available | Upstream | -392 |
Matrix_25 | AP3 | Not available | Intron | 3385 |
Matrix_252 | RAP2.6 | Not available | Upstream | -223 |
| | | Upstream | -224 |
| | | Upstream | -225 |
Matrix_261 | ATERF-1 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -387 |
| | | Upstream | -388 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -193 |
| | | Upstream | -196 |
Matrix_272 | DEAR4 | Not available | Upstream | -224 |
| | | Upstream | -225 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -388 |
| | | Upstream | -389 |
| | | Upstream | -529 |
| | | Upstream | -530 |
Matrix_283 | GATA15;GATA17;AT4G16141;GATA22;GATA23;GATA16;GNC | Not available | Upstream | -519 |
Matrix_287 | ERF2 | Not available | Upstream | -224 |
| | | Upstream | -225 |
Matrix_288 | RAP2.3 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_290 | AP2 | Not available | Upstream | -480 |
Matrix_294 | MEE35 | Not available | Upstream | -389 |
| | | Upstream | -390 |
Matrix_295 | ERF1 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_296 | GBF2 | Not available | Upstream | -392 |
Matrix_297 | TCP15 | Not available | Upstream | -479 |
| | | Upstream | -526 |
| | | Upstream | -527 |
| | | Upstream | -529 |
| | | Upstream | -530 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -392 |
| | | Upstream | -393 |
| | | Upstream | -472 |
Matrix_301 | PIL5 | Not available | Upstream | -388 |
Matrix_321 | HRD | Not available | Upstream | -225 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_331 | GBF1 | Not available | Upstream | -391 |
| | | Upstream | -392 |
Matrix_334 | AT3G23230 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_343 | AT2G33710 | Not available | Upstream | -224 |
| | | Upstream | -225 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -226 |
Matrix_348 | AT5G51910 | Not available | Upstream | -387 |
| | | Upstream | -388 |
| | | Upstream | -480 |
| | | Upstream | -528 |
| | | Upstream | -529 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_360 | ORA59 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_363 | RAP2.3 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -191 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -225 |
| | | Upstream | -226 |
| | | Upstream | -227 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_378 | ATERF1 | Not available | Upstream | -224 |
| | | Upstream | -225 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -226 |
Matrix_40 | TCP2 | Not available | Upstream | -387 |
| | | Upstream | -388 |
Matrix_406 | ATERF-7 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_409 | DEAR3 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_42 | AT2G45680 | Not available | Upstream | -387 |
| | | Upstream | -388 |
| | | Upstream | -480 |
| | | Upstream | -528 |
| | | Upstream | -529 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_448 | ATERF6 | Not available | Upstream | -225 |
| | | Upstream | -226 |
| | | Upstream | -228 |
| | | Upstream | -229 |
Matrix_45 | DRN | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -225 |
Matrix_462 | ATERF-8 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_473 | RRTF1 | Not available | Upstream | -223 |
| | | Upstream | -224 |
| | | Upstream | -225 |
Matrix_484 | ATERF13 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_488 | ABF1 | Not available | Upstream | -476 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -226 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_507 | TCP3 | Not available | Upstream | -388 |
| | | Upstream | -389 |
| | | Upstream | -479 |
| | | Upstream | -529 |
| | | Upstream | -530 |
Matrix_517 | ERF12 | Not available | Upstream | -226 |
| | | Upstream | -227 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -223 |
| | | Upstream | -225 |
| | | Upstream | -226 |
Matrix_70 | GATA26 | Not available | Upstream | -518 |
Matrix_79 | FUS3 | Not available | Upstream | -505 |
Matrix_82 | TCP17 | Not available | Upstream | -389 |
| | | Upstream | -390 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_91 | CRF3 | Not available | Upstream | -225 |
| | | Upstream | -226 |
Matrix_94 | TCP5 | Not available | Upstream | -389 |
| | | Upstream | -390 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Intron | 3550 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -300 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -485 |
| | | Upstream | -487 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Intron | 3370 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Intron | 3440 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -485 |
| | | Upstream | -487 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Intron | 3440 |
| | | Upstream | -515 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Intron | 3552 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Intron | 3457 |
| | | Upstream | -233 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Intron | 3575 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -227 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Intron | 3440 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -538 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -288 |
Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | Intron | 3530 |
Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Intron | 3416 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Upstream | -612 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -210 |
| | | Upstream | -338 |
Motif_419 | MYB4 binding site motif | Not available | Intron | 3432 |
| | | Intron | 3416 |
Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | Intron | 3524 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -485 |
| | | Upstream | -487 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Intron | 3378 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Intron | 3553 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -195 |
| | | Upstream | -198 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -480 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Intron | 3415 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Intron | 3371 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 12885 |
| | | Intron | 3576 |
| | | Intron | 3369 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Intron | 3415 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -301 |
| | | Upstream | -311 |
Motif_88 | MYB2AT | Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis | Intron | 3440 |