View conserved binding sites


Gene
GM06G13280
Description
dependent glutamate synthase 1, chloroplastic/mitochondrial
Alias
Glyma06g13280;Glyma06g13280.2;PAC:26300419;Glyma06g13280.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-224
Matrix_109GBF3Not availableUpstream-391
Upstream-392
Upstream-536
Matrix_110ATABI4;AT3G57600Not availableUpstream-223
Upstream-224
Matrix_113ABI5Not availableUpstream-391
Upstream-392
Matrix_119RRTF1Not availableUpstream-225
Upstream-226
Matrix_130TCP16Not availableUpstream-387
Upstream-388
Matrix_135ABI3Not availableUpstream-505
Matrix_138RRTF1Not availableUpstream-225
Upstream-226
Matrix_144AT5G08330;AT5G23280Not availableUpstream-387
Upstream-388
Matrix_146ORA47Not availableUpstream-224
Upstream-225
Matrix_147ERF3;AT1G80580Not availableUpstream-226
Upstream-227
Matrix_151ASIL1Not availableUpstream-225
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-225
Upstream-226
Matrix_156POC1Not availableUpstream-391
Upstream-392
Matrix_190ATERF1Not availableUpstream-223
Upstream-224
Upstream-225
Matrix_196TCP20;AT5G41030Not availableUpstream-385
Upstream-386
Upstream-478
Upstream-530
Upstream-531
Matrix_216TCP16Not availableUpstream-387
Upstream-388
Matrix_224ERF1Not availableUpstream-225
Upstream-226
Matrix_231HDG2;HDG3;ATML1;HB-7Not availableIntron3481
Matrix_232TCP23Not availableUpstream-479
Upstream-529
Upstream-530
Matrix_234RAP2.3Not availableUpstream-223
Upstream-224
Upstream-225
Matrix_24POC1Not availableUpstream-389
Matrix_243RAP2.12;RAP2.2Not availableUpstream-225
Matrix_247PIF3Not availableUpstream-392
Matrix_25AP3Not availableIntron3385
Matrix_252RAP2.6Not availableUpstream-223
Upstream-224
Upstream-225
Matrix_261ATERF-1Not availableUpstream-225
Upstream-226
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-387
Upstream-388
Matrix_269FHY3/FAR1Not availableUpstream-193
Upstream-196
Matrix_272DEAR4Not availableUpstream-224
Upstream-225
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-388
Upstream-389
Upstream-529
Upstream-530
Matrix_283GATA15;GATA17;AT4G16141;GATA22;GATA23;GATA16;GNCNot availableUpstream-519
Matrix_287ERF2Not availableUpstream-224
Upstream-225
Matrix_288RAP2.3Not availableUpstream-225
Upstream-226
Matrix_290AP2Not availableUpstream-480
Matrix_294MEE35Not availableUpstream-389
Upstream-390
Matrix_295ERF1Not availableUpstream-226
Upstream-227
Matrix_296GBF2Not availableUpstream-392
Matrix_297TCP15Not availableUpstream-479
Upstream-526
Upstream-527
Upstream-529
Upstream-530
Matrix_300bZIP68;bZIP16Not availableUpstream-392
Upstream-393
Upstream-472
Matrix_301PIL5Not availableUpstream-388
Matrix_321HRDNot availableUpstream-225
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-225
Upstream-226
Matrix_331GBF1Not availableUpstream-391
Upstream-392
Matrix_334AT3G23230Not availableUpstream-225
Upstream-226
Matrix_343AT2G33710Not availableUpstream-224
Upstream-225
Matrix_344ATERF15;AT4G18450Not availableUpstream-226
Matrix_348AT5G51910Not availableUpstream-387
Upstream-388
Upstream-480
Upstream-528
Upstream-529
Matrix_355ERF10;ERF11Not availableUpstream-225
Upstream-226
Matrix_360ORA59Not availableUpstream-226
Upstream-227
Matrix_363RAP2.3Not availableUpstream-225
Upstream-226
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-191
Matrix_374AT5G07580;AT5G61590Not availableUpstream-225
Upstream-226
Upstream-227
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-225
Upstream-226
Matrix_378ATERF1Not availableUpstream-224
Upstream-225
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-226
Matrix_40TCP2Not availableUpstream-387
Upstream-388
Matrix_406ATERF-7Not availableUpstream-226
Upstream-227
Matrix_409DEAR3Not availableUpstream-225
Upstream-226
Matrix_42AT2G45680Not availableUpstream-387
Upstream-388
Upstream-480
Upstream-528
Upstream-529
Matrix_426CRF1;CRF2Not availableUpstream-225
Upstream-226
Matrix_448ATERF6Not availableUpstream-225
Upstream-226
Upstream-228
Upstream-229
Matrix_45DRNNot availableUpstream-226
Upstream-227
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-225
Matrix_462ATERF-8Not availableUpstream-226
Upstream-227
Matrix_473RRTF1Not availableUpstream-223
Upstream-224
Upstream-225
Matrix_484ATERF13Not availableUpstream-226
Upstream-227
Matrix_488ABF1Not availableUpstream-476
Matrix_493AT1G22985;AT1G71130Not availableUpstream-225
Upstream-226
Matrix_5AT5G51190;ERF104Not availableUpstream-226
Matrix_50ATERF14;AT5G43410Not availableUpstream-225
Upstream-226
Matrix_506DRNL;ATERF-4Not availableUpstream-225
Upstream-226
Matrix_507TCP3Not availableUpstream-388
Upstream-389
Upstream-479
Upstream-529
Upstream-530
Matrix_517ERF12Not availableUpstream-226
Upstream-227
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-223
Upstream-225
Upstream-226
Matrix_70GATA26Not availableUpstream-518
Matrix_79FUS3Not availableUpstream-505
Matrix_82TCP17Not availableUpstream-389
Upstream-390
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-225
Upstream-226
Matrix_91CRF3Not availableUpstream-225
Upstream-226
Matrix_94TCP5Not availableUpstream-389
Upstream-390
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceIntron3550
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-300
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-485
Upstream-487
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisIntron3370
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Intron3440
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-485
Upstream-487
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisIntron3440
Upstream-515
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesIntron3552
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesIntron3457
Upstream-233
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsIntron3575
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-227
Motif_336MYBMOUSEBinding site for mouse c-myb proteinIntron3440
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-538
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-288
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionIntron3530
Motif_404AACACOREOSGLUB1Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoterIntron3416
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-612
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-210
Upstream-338
Motif_419MYB4 binding site motifNot availableIntron3432
Intron3416
Motif_422SP8BFIBSP8BIBOne of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8bIntron3524
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-485
Upstream-487
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Intron3378
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisIntron3553
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-195
Upstream-198
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-480
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementIntron3415
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Intron3371
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream12885
Intron3576
Intron3369
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementIntron3415
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-301
Upstream-311
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisIntron3440