Matrix_104 | PI | Not available | Upstream | -1357 |
| | | Upstream | -1358 |
| | | Upstream | -1411 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1357 |
| | | Upstream | -1358 |
| | | Upstream | -1411 |
Matrix_109 | GBF3 | Not available | Upstream | -1357 |
| | | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_113 | ABI5 | Not available | Upstream | -1357 |
| | | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1411 |
| | | Upstream | -1413 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1354 |
| | | Upstream | -1355 |
Matrix_120 | BEE2 | Not available | Upstream | -1358 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -1357 |
| | | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1411 |
| | | Upstream | -1412 |
Matrix_129 | ABF1 | Not available | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1412 |
Matrix_130 | TCP16 | Not available | Upstream | -1291 |
Matrix_133 | DYT1 | Not available | Upstream | -1359 |
Matrix_134 | ABF1 | Not available | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -1359 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -1291 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1354 |
Matrix_156 | POC1 | Not available | Upstream | -1357 |
| | | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -1358 |
Matrix_160 | RVE1 | Not available | Intron | 2246 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -1355 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -1358 |
Matrix_214 | AP1 | Not available | Upstream | -1356 |
| | | Upstream | -1357 |
| | | Upstream | -1410 |
Matrix_216 | TCP16 | Not available | Upstream | -1291 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_232 | TCP23 | Not available | Upstream | -1290 |
Matrix_233 | MYC3 | Not available | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_24 | POC1 | Not available | Upstream | -1354 |
Matrix_247 | PIF3 | Not available | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1412 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -1358 |
Matrix_264 | ATAREB1 | Not available | Upstream | -1355 |
| | | Upstream | -1356 |
| | | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1409 |
| | | Upstream | -1412 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -1291 |
Matrix_294 | MEE35 | Not available | Upstream | -1291 |
Matrix_296 | GBF2 | Not available | Upstream | -1358 |
| | | Upstream | -1359 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_301 | PIL5 | Not available | Upstream | -1353 |
| | | Upstream | -1359 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1356 |
Matrix_331 | GBF1 | Not available | Upstream | -1357 |
| | | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_332 | SPT;ALC | Not available | Upstream | -1358 |
| | | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1412 |
| | | Upstream | -1413 |
Matrix_338 | AP2 | Not available | Upstream | -1355 |
| | | Upstream | -1356 |
| | | Upstream | -1409 |
Matrix_345 | POC1 | Not available | Upstream | -1354 |
| | | Upstream | -1355 |
Matrix_348 | AT5G51910 | Not available | Upstream | -1291 |
Matrix_356 | PRR5 | Not available | Upstream | -1351 |
| | | Upstream | -1355 |
Matrix_359 | FLC | Not available | Upstream | -1356 |
| | | Upstream | -1357 |
| | | Upstream | -1410 |
Matrix_389 | ILR3 | Not available | Upstream | -1358 |
Matrix_40 | TCP2 | Not available | Upstream | -1291 |
Matrix_403 | BZR1 | Not available | Upstream | -1356 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -1356 |
Matrix_443 | AGL15 | Not available | Upstream | -1356 |
| | | Upstream | -1357 |
| | | Upstream | -1410 |
Matrix_488 | ABF1 | Not available | Upstream | -1350 |
| | | Upstream | -1357 |
Matrix_53 | MYC3 | Not available | Upstream | -1360 |
Matrix_55 | PIF3 | Not available | Upstream | -1357 |
| | | Upstream | -1358 |
| | | Upstream | -1411 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -1359 |
Matrix_64 | PIF5 | Not available | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1413 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -1359 |
| | | Upstream | -1360 |
Matrix_7 | PIF4 | Not available | Upstream | -1360 |
| | | Upstream | -1361 |
| | | Upstream | -1414 |
Matrix_77 | PRR5 | Not available | Upstream | -1357 |
Matrix_80 | BIM1 | Not available | Upstream | -1359 |
Matrix_82 | TCP17 | Not available | Upstream | -1291 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Intron | 3989 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Intron | 3992 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1360 |
| | | Upstream | -1413 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Intron | 3977 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -1360 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -1359 |
| | | Upstream | -1412 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -1359 |
| | | Upstream | -1360 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Intron | 3977 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -1358 |
| | | Upstream | -1360 |
Motif_252 | GBOXPC | G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner | Upstream | -1411 |
Motif_261 | S1FBOXSORPS1L21 | S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity | Intron | 2229 |
| | | Intron | 1408 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -1360 |
| | | Upstream | -1413 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Intron | 2235 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Intron | 3977 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -1360 |
Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Upstream | -675 |
| | | Upstream | -679 |
Motif_408 | EVENINGAT | Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock | Intron | 2245 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -1359 |
| | | Upstream | -1360 |
| | | Upstream | -1412 |
| | | Upstream | -1413 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -1363 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -1359 |
| | | Upstream | -1412 |
Motif_490 | PROLAMINBOXOSGLUB1 | Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene | Intron | 3992 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -1347 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Intron | 3990 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -1361 |
| | | Upstream | -1414 |
Motif_599 | LREBOXIIPCCHS1;HY5 | BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | Upstream | -1358 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -1361 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Intron | 1386 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Intron | 2249 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -1360 |
| | | Upstream | -1413 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Intron | 2241 |
| | | Intron | 2240 |
Motif_88 | MYB2AT | Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis | Intron | 3977 |