View conserved binding sites


Gene
GM06G11030
Description
Vegetative incompatibility protein HET-E-1
Alias
Glyma06g11030;Glyma06g11030.1;PAC:26298513;Glyma06g11030.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-1357
Upstream-1358
Upstream-1411
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1357
Upstream-1358
Upstream-1411
Matrix_109GBF3Not availableUpstream-1357
Upstream-1358
Upstream-1359
Upstream-1360
Upstream-1413
Matrix_113ABI5Not availableUpstream-1357
Upstream-1358
Upstream-1359
Upstream-1360
Upstream-1411
Upstream-1413
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1354
Upstream-1355
Matrix_120BEE2Not availableUpstream-1358
Matrix_122ABF1;AREB2Not availableUpstream-1357
Upstream-1358
Upstream-1359
Upstream-1411
Upstream-1412
Matrix_129ABF1Not availableUpstream-1358
Upstream-1359
Upstream-1412
Matrix_130TCP16Not availableUpstream-1291
Matrix_133DYT1Not availableUpstream-1359
Matrix_134ABF1Not availableUpstream-1359
Upstream-1360
Upstream-1413
Matrix_14ZCW32;AT5G62610Not availableUpstream-1359
Matrix_144AT5G08330;AT5G23280Not availableUpstream-1291
Matrix_145GBF4;AT5G44080Not availableUpstream-1359
Upstream-1360
Upstream-1413
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1354
Matrix_156POC1Not availableUpstream-1357
Upstream-1358
Upstream-1359
Upstream-1360
Upstream-1413
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-1358
Matrix_160RVE1Not availableIntron2246
Matrix_192FHY3/FAR1Not availableUpstream-1359
Upstream-1360
Upstream-1413
Matrix_194HYH;HY5Not availableUpstream-1355
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-1358
Matrix_214AP1Not availableUpstream-1356
Upstream-1357
Upstream-1410
Matrix_216TCP16Not availableUpstream-1291
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1359
Upstream-1360
Upstream-1413
Matrix_232TCP23Not availableUpstream-1290
Matrix_233MYC3Not availableUpstream-1359
Upstream-1360
Upstream-1413
Matrix_24POC1Not availableUpstream-1354
Matrix_247PIF3Not availableUpstream-1358
Upstream-1359
Upstream-1412
Matrix_259AT1G50680;AT1G51120Not availableUpstream-1358
Matrix_264ATAREB1Not availableUpstream-1355
Upstream-1356
Upstream-1358
Upstream-1359
Upstream-1409
Upstream-1412
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-1291
Matrix_294MEE35Not availableUpstream-1291
Matrix_296GBF2Not availableUpstream-1358
Upstream-1359
Matrix_300bZIP68;bZIP16Not availableUpstream-1358
Upstream-1359
Upstream-1360
Upstream-1413
Matrix_301PIL5Not availableUpstream-1353
Upstream-1359
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1356
Matrix_331GBF1Not availableUpstream-1357
Upstream-1358
Upstream-1359
Upstream-1360
Upstream-1413
Matrix_332SPT;ALCNot availableUpstream-1358
Upstream-1359
Upstream-1360
Upstream-1412
Upstream-1413
Matrix_338AP2Not availableUpstream-1355
Upstream-1356
Upstream-1409
Matrix_345POC1Not availableUpstream-1354
Upstream-1355
Matrix_348AT5G51910Not availableUpstream-1291
Matrix_356PRR5Not availableUpstream-1351
Upstream-1355
Matrix_359FLCNot availableUpstream-1356
Upstream-1357
Upstream-1410
Matrix_389ILR3Not availableUpstream-1358
Matrix_40TCP2Not availableUpstream-1291
Matrix_403BZR1Not availableUpstream-1356
Matrix_438AtbZIP63Not availableUpstream-1356
Matrix_443AGL15Not availableUpstream-1356
Upstream-1357
Upstream-1410
Matrix_488ABF1Not availableUpstream-1350
Upstream-1357
Matrix_53MYC3Not availableUpstream-1360
Matrix_55PIF3Not availableUpstream-1357
Upstream-1358
Upstream-1411
Matrix_60AT1G01260;AT5G57150Not availableUpstream-1359
Matrix_64PIF5Not availableUpstream-1359
Upstream-1360
Upstream-1413
Matrix_65POC1;PIL1Not availableUpstream-1359
Upstream-1360
Matrix_7PIF4Not availableUpstream-1360
Upstream-1361
Upstream-1414
Matrix_77PRR5Not availableUpstream-1357
Matrix_80BIM1Not availableUpstream-1359
Matrix_82TCP17Not availableUpstream-1291
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxIntron3989
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFIntron3992
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1360
Upstream-1413
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Intron3977
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1360
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-1359
Upstream-1412
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-1359
Upstream-1360
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisIntron3977
Motif_244ABRE-like binding site motifNot availableUpstream-1358
Upstream-1360
Motif_252GBOXPCG box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated mannerUpstream-1411
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityIntron2229
Intron1408
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-1360
Upstream-1413
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsIntron2235
Motif_336MYBMOUSEBinding site for mouse c-myb proteinIntron3977
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-1360
Motif_404AACACOREOSGLUB1Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoterUpstream-675
Upstream-679
Motif_408EVENINGATEvening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clockIntron2245
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-1359
Upstream-1360
Upstream-1412
Upstream-1413
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-1363
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-1359
Upstream-1412
Motif_490PROLAMINBOXOSGLUB1Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 geneIntron3992
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-1347
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaIntron3990
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-1361
Upstream-1414
Motif_599LREBOXIIPCCHS1;HY5BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-1358
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-1361
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Intron1386
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoIntron2249
Motif_638ABRE binding site motifNot availableUpstream-1360
Upstream-1413
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionIntron2241
Intron2240
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisIntron3977