Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -682 |
Matrix_113 | ABI5 | Not available | Upstream | -713 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -651 |
Matrix_120 | BEE2 | Not available | Upstream | -681 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -714 |
Matrix_123 | FUSCA3 | Not available | Intron | 5380 |
| | | Intron | 5943 |
Matrix_129 | ABF1 | Not available | Upstream | -714 |
Matrix_130 | TCP16 | Not available | Downstream | 6760 |
Matrix_133 | DYT1 | Not available | Upstream | -698 |
Matrix_134 | ABF1 | Not available | Upstream | -714 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -713 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Downstream | 6837 |
Matrix_156 | POC1 | Not available | Upstream | -680 |
Matrix_174 | ZAT2 | Not available | Intron | 5621 |
Matrix_191 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -684 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -713 |
Matrix_196 | TCP20;AT5G41030 | Not available | Intron | 5728 |
Matrix_216 | TCP16 | Not available | Downstream | 6760 |
| | | Downstream | 6761 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Intron | 5632 |
Matrix_232 | TCP23 | Not available | Intron | 5727 |
Matrix_24 | POC1 | Not available | Upstream | -651 |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -1017 |
Matrix_264 | ATAREB1 | Not available | Upstream | -714 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Downstream | 6760 |
| | | Downstream | 6761 |
Matrix_27 | ATAIB;ATNIG1 | Not available | Upstream | -679 |
Matrix_290 | AP2 | Not available | Upstream | -645 |
Matrix_297 | TCP15 | Not available | Intron | 5727 |
| | | Downstream | 6759 |
| | | Downstream | 6762 |
Matrix_301 | PIL5 | Not available | Upstream | -698 |
Matrix_320 | MYC4 | Not available | Upstream | -680 |
Matrix_322 | NST3;ANAC015;BRN2 | Not available | Upstream | -253 |
Matrix_323 | BIM3 | Not available | Upstream | -681 |
Matrix_345 | POC1 | Not available | Upstream | -651 |
| | | Upstream | -650 |
Matrix_348 | AT5G51910 | Not available | Intron | 5726 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -680 |
Matrix_366 | ARR14 | Not available | Intron | 5713 |
Matrix_39 | AP1 | Not available | Intron | 1214 |
Matrix_403 | BZR1 | Not available | Upstream | -716 |
Matrix_409 | DEAR3 | Not available | Intron | 5784 |
Matrix_42 | AT2G45680 | Not available | Intron | 5726 |
Matrix_434 | ARR11 | Not available | Intron | 3386 |
| | | Intron | 5713 |
Matrix_449 | BIM2 | Not available | Upstream | -681 |
Matrix_48 | PI | Not available | Upstream | -639 |
Matrix_488 | ABF1 | Not available | Upstream | -701 |
| | | Intron | 3596 |
Matrix_5 | AT5G51190;ERF104 | Not available | Downstream | 6840 |
Matrix_507 | TCP3 | Not available | Upstream | -643 |
| | | Downstream | 6759 |
| | | Downstream | 6762 |
Matrix_514 | DYT1 | Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development | Upstream | -695 |
Matrix_53 | MYC3 | Not available | Upstream | -679 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Intron | 5784 |
Matrix_64 | PIF5 | Not available | Upstream | -680 |
Matrix_7 | PIF4 | Not available | Upstream | -679 |
Matrix_77 | PRR5 | Not available | Upstream | -682 |
Matrix_80 | BIM1 | Not available | Upstream | -680 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -621 |
| | | Intron | 3425 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Intron | 5720 |
Motif_134 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -690 |
| | | Upstream | -689 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -692 |
| | | Upstream | -690 |
| | | Upstream | -680 |
| | | Upstream | -678 |
Motif_143 | VND6 | Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation | Upstream | -239 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -241 |
Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | Upstream | -531 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -712 |
| | | Upstream | -691 |
| | | Upstream | -679 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -712 |
| | | Upstream | -691 |
| | | Upstream | -679 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -679 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Intron | 5704 |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | Upstream | -625 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -712 |
Motif_250 | ACGTOSGLUB1 | ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression | Upstream | -53 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 6556 |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Downstream | 6839 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Intron | 3403 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -712 |
| | | Upstream | -691 |
| | | Upstream | -679 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -242 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -708 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -624 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Intron | 5664 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Intron | 3400 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -55 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -191 |
| | | Intron | 5665 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -711 |
Motif_640 | RYREPEATBNNAPA | RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Upstream | -258 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -191 |
| | | Intron | 5665 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -711 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Intron | 5700 |