View conserved binding sites


Gene
GM06G03180
Description
Cytokinin dehydrogenase
Alias
Glyma06g03180;Glyma06g03180.2;PAC:26301302;Glyma06g03180.2
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-682
Matrix_113ABI5Not availableUpstream-713
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-651
Matrix_120BEE2Not availableUpstream-681
Matrix_122ABF1;AREB2Not availableUpstream-714
Matrix_123FUSCA3Not availableIntron5380
Intron5943
Matrix_129ABF1Not availableUpstream-714
Matrix_130TCP16Not availableDownstream6760
Matrix_133DYT1Not availableUpstream-698
Matrix_134ABF1Not availableUpstream-714
Matrix_14ZCW32;AT5G62610Not availableUpstream-713
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableDownstream6837
Matrix_156POC1Not availableUpstream-680
Matrix_174ZAT2Not availableIntron5621
Matrix_191PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-684
Matrix_192FHY3/FAR1Not availableUpstream-713
Matrix_196TCP20;AT5G41030Not availableIntron5728
Matrix_216TCP16Not availableDownstream6760
Downstream6761
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron5632
Matrix_232TCP23Not availableIntron5727
Matrix_24POC1Not availableUpstream-651
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-1017
Matrix_264ATAREB1Not availableUpstream-714
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsDownstream6760
Downstream6761
Matrix_27ATAIB;ATNIG1Not availableUpstream-679
Matrix_290AP2Not availableUpstream-645
Matrix_297TCP15Not availableIntron5727
Downstream6759
Downstream6762
Matrix_301PIL5Not availableUpstream-698
Matrix_320MYC4Not availableUpstream-680
Matrix_322NST3;ANAC015;BRN2Not availableUpstream-253
Matrix_323BIM3Not availableUpstream-681
Matrix_345POC1Not availableUpstream-651
Upstream-650
Matrix_348AT5G51910Not availableIntron5726
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-680
Matrix_366ARR14Not availableIntron5713
Matrix_39AP1Not availableIntron1214
Matrix_403BZR1Not availableUpstream-716
Matrix_409DEAR3Not availableIntron5784
Matrix_42AT2G45680Not availableIntron5726
Matrix_434ARR11Not availableIntron3386
Intron5713
Matrix_449BIM2Not availableUpstream-681
Matrix_48PINot availableUpstream-639
Matrix_488ABF1Not availableUpstream-701
Intron3596
Matrix_5AT5G51190;ERF104Not availableDownstream6840
Matrix_507TCP3Not availableUpstream-643
Downstream6759
Downstream6762
Matrix_514DYT1Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen developmentUpstream-695
Matrix_53MYC3Not availableUpstream-679
Matrix_57WIN1;SHN3;SHN2Not availableIntron5784
Matrix_64PIF5Not availableUpstream-680
Matrix_7PIF4Not availableUpstream-679
Matrix_77PRR5Not availableUpstream-682
Matrix_80BIM1Not availableUpstream-680
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-621
Intron3425
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterIntron5720
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-690
Upstream-689
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-692
Upstream-690
Upstream-680
Upstream-678
Motif_143VND6Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiationUpstream-239
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-241
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-531
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-712
Upstream-691
Upstream-679
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-712
Upstream-691
Upstream-679
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-679
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisIntron5704
Motif_235C8GCARGATBinding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)Upstream-625
Motif_244ABRE-like binding site motifNot availableUpstream-712
Motif_250ACGTOSGLUB1ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expressionUpstream-53
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream6556
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Downstream6839
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsIntron3403
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-712
Upstream-691
Upstream-679
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-242
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-708
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-624
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorIntron5664
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightIntron3400
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-55
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-191
Intron5665
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-711
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-258
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-191
Intron5665
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-711
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneIntron5700