View conserved binding sites


Gene
GM06G01430
Description
Transcription factor BEE 2
Alias
Glyma06g01430;Glyma06g01430.1;PAC:26301995;Glyma06g01430.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-404
Upstream-405
Upstream-721
Upstream-846
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-404
Upstream-405
Upstream-721
Matrix_109GBF3Not availableUpstream-404
Upstream-405
Upstream-406
Upstream-407
Upstream-721
Matrix_113ABI5Not availableUpstream-404
Upstream-405
Upstream-406
Upstream-407
Upstream-721
Upstream-723
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-401
Upstream-402
Upstream-403
Upstream-718
Upstream-719
Matrix_120BEE2Not availableUpstream-405
Upstream-406
Upstream-722
Matrix_122ABF1;AREB2Not availableUpstream-404
Upstream-405
Upstream-406
Upstream-721
Upstream-722
Upstream-846
Matrix_129ABF1Not availableUpstream-405
Upstream-406
Upstream-722
Upstream-847
Matrix_130TCP16Not availableUpstream-384
Upstream-385
Matrix_134ABF1Not availableUpstream-405
Upstream-406
Upstream-848
Upstream-894
Matrix_14ZCW32;AT5G62610Not availableUpstream-405
Upstream-406
Upstream-407
Upstream-722
Matrix_145GBF4;AT5G44080Not availableUpstream-406
Upstream-407
Upstream-723
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-401
Matrix_156POC1Not availableUpstream-404
Upstream-405
Upstream-406
Upstream-407
Upstream-721
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-405
Upstream-406
Upstream-722
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-405
Upstream-406
Upstream-719
Matrix_192FHY3/FAR1Not availableUpstream-402
Upstream-403
Matrix_194HYH;HY5Not availableUpstream-402
Upstream-403
Upstream-755
Upstream-844
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-405
Upstream-406
Upstream-722
Upstream-758
Matrix_214AP1Not availableUpstream-403
Upstream-404
Upstream-720
Matrix_216TCP16Not availableUpstream-384
Upstream-385
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-402
Upstream-403
Upstream-848
Matrix_232TCP23Not availableUpstream-383
Upstream-384
Matrix_233MYC3Not availableUpstream-406
Upstream-407
Upstream-723
Matrix_24POC1Not availableUpstream-401
Upstream-402
Upstream-843
Matrix_247PIF3Not availableUpstream-405
Upstream-406
Upstream-722
Matrix_259AT1G50680;AT1G51120Not availableUpstream-405
Upstream-406
Matrix_264ATAREB1Not availableUpstream-402
Upstream-403
Upstream-405
Upstream-406
Upstream-722
Upstream-758
Upstream-847
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-384
Upstream-385
Matrix_294MEE35Not availableUpstream-384
Upstream-385
Matrix_296GBF2Not availableUpstream-405
Upstream-406
Upstream-407
Upstream-722
Matrix_297TCP15Not availableUpstream-383
Upstream-384
Matrix_300bZIP68;bZIP16Not availableUpstream-405
Upstream-406
Upstream-407
Upstream-722
Upstream-894
Matrix_301PIL5Not availableUpstream-400
Upstream-401
Upstream-753
Upstream-758
Matrix_309FLCNot availableUpstream-98
Matrix_323BIM3Not availableUpstream-405
Matrix_330MYC2;TT8Not availableUpstream-405
Upstream-406
Upstream-722
Matrix_331GBF1Not availableUpstream-404
Upstream-405
Upstream-406
Upstream-407
Upstream-721
Matrix_332SPT;ALCNot availableUpstream-405
Upstream-406
Upstream-407
Upstream-722
Upstream-723
Matrix_338AP2Not availableUpstream-402
Upstream-403
Upstream-755
Upstream-844
Matrix_345POC1Not availableUpstream-401
Upstream-402
Upstream-403
Upstream-718
Upstream-719
Matrix_348AT5G51910Not availableUpstream-384
Upstream-385
Matrix_356PRR5Not availableUpstream-398
Upstream-399
Upstream-402
Upstream-403
Upstream-755
Upstream-844
Matrix_359FLCNot availableUpstream-720
Matrix_369AT2G18300Not availableUpstream-403
Upstream-404
Upstream-405
Upstream-406
Matrix_389ILR3Not availableUpstream-405
Upstream-406
Matrix_403BZR1Not availableUpstream-403
Upstream-404
Upstream-720
Matrix_42AT2G45680Not availableUpstream-384
Upstream-385
Matrix_438AtbZIP63Not availableUpstream-403
Upstream-404
Upstream-405
Upstream-406
Upstream-720
Upstream-761
Matrix_443AGL15Not availableUpstream-403
Upstream-404
Upstream-720
Upstream-845
Matrix_449BIM2Not availableUpstream-405
Matrix_465MYC4Not availableUpstream-405
Upstream-406
Upstream-722
Matrix_480BES1Not availableUpstream-404
Upstream-405
Upstream-406
Upstream-721
Upstream-722
Upstream-893
Matrix_488ABF1Not availableUpstream-397
Upstream-398
Upstream-404
Upstream-405
Upstream-757
Upstream-846
Upstream-886
Matrix_507TCP3Not availableUpstream-383
Upstream-384
Upstream-409
Upstream-410
Matrix_53MYC3Not availableUpstream-403
Upstream-404
Upstream-407
Upstream-408
Upstream-720
Matrix_55PIF3Not availableUpstream-404
Upstream-405
Upstream-721
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-406
Matrix_60AT1G01260;AT5G57150Not availableUpstream-406
Upstream-407
Upstream-723
Matrix_64PIF5Not availableUpstream-406
Upstream-407
Upstream-723
Matrix_65POC1;PIL1Not availableUpstream-406
Upstream-407
Matrix_7PIF4Not availableUpstream-405
Upstream-406
Upstream-407
Upstream-408
Upstream-722
Matrix_77PRR5Not availableUpstream-403
Upstream-404
Upstream-405
Upstream-721
Upstream-846
Upstream-893
Matrix_80BIM1Not availableUpstream-404
Upstream-405
Upstream-406
Upstream-407
Upstream-721
Upstream-759
Matrix_82TCP17Not availableUpstream-384
Upstream-385
Matrix_94TCP5Not availableUpstream-384
Upstream-385
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-376
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-179
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-407
Upstream-723
Upstream-759
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-407
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-226
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-405
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-375
Upstream-406
Upstream-407
Upstream-722
Upstream-723
Upstream-848
Upstream-895
Upstream-896
Motif_244ABRE-like binding site motifNot availableUpstream-405
Upstream-764
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-132
Upstream-847
Upstream-897
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-321
Upstream-416
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-405
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-407
Upstream-723
Upstream-759
Upstream-764
Upstream-1140
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionUpstream-230
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-321
Upstream-417
Motif_400ABREAZMRAB28ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissuesUpstream-405
Motif_419MYB4 binding site motifNot availableUpstream-507
Upstream-524
Motif_420SORLREP2ATone of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-371
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-406
Upstream-407
Upstream-722
Upstream-723
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-406
Upstream-722
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-226
Upstream-1991
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-405
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-375
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-408
Upstream-720
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-411
Upstream-1222
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-405
Motif_638ABRE binding site motifNot availableUpstream-405
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-404
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-352
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-352
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-129