View conserved binding sites


Gene
GM05G34730
Description
CHY zinc finger domain-containing protein 1
Alias
Glyma05g34730;Glyma05g34730.1;PAC:26322773;Glyma05g34730.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-357
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-357
Matrix_109GBF3Not availableUpstream-357
Upstream-358
Upstream-359
Upstream-374
Matrix_113ABI5Not availableUpstream-357
Upstream-358
Upstream-359
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-354
Upstream-355
Matrix_120BEE2Not availableUpstream-357
Upstream-358
Matrix_122ABF1;AREB2Not availableUpstream-357
Upstream-358
Matrix_129ABF1Not availableUpstream-357
Upstream-358
Matrix_134ABF1Not availableUpstream-357
Upstream-358
Upstream-359
Matrix_14ZCW32;AT5G62610Not availableUpstream-357
Upstream-358
Upstream-359
Matrix_145GBF4;AT5G44080Not availableUpstream-358
Upstream-359
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-354
Matrix_156POC1Not availableUpstream-357
Upstream-358
Upstream-359
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-357
Upstream-358
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-357
Matrix_192FHY3/FAR1Not availableUpstream-355
Upstream-358
Upstream-359
Upstream-372
Matrix_194HYH;HY5Not availableUpstream-355
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-357
Upstream-358
Matrix_214AP1Not availableUpstream-356
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-355
Upstream-358
Upstream-359
Upstream-372
Matrix_233MYC3Not availableUpstream-358
Upstream-359
Matrix_24POC1Not availableUpstream-354
Matrix_247PIF3Not availableUpstream-357
Upstream-358
Upstream-374
Upstream-375
Matrix_259AT1G50680;AT1G51120Not availableUpstream-357
Upstream-358
Upstream-374
Upstream-375
Matrix_264ATAREB1Not availableUpstream-355
Upstream-357
Upstream-358
Matrix_269FHY3/FAR1Not availableUpstream-248
Matrix_296GBF2Not availableUpstream-357
Upstream-358
Upstream-359
Upstream-374
Upstream-375
Matrix_300bZIP68;bZIP16Not availableUpstream-357
Upstream-358
Upstream-359
Upstream-374
Upstream-375
Matrix_301PIL5Not availableUpstream-353
Upstream-359
Matrix_323BIM3Not availableUpstream-357
Upstream-358
Matrix_330MYC2;TT8Not availableUpstream-357
Upstream-358
Matrix_331GBF1Not availableUpstream-357
Upstream-358
Upstream-359
Upstream-374
Matrix_332SPT;ALCNot availableUpstream-357
Upstream-358
Upstream-359
Matrix_338AP2Not availableUpstream-355
Matrix_339bHLH104Not availableUpstream-357
Upstream-358
Matrix_345POC1Not availableUpstream-354
Upstream-355
Matrix_356PRR5Not availableUpstream-351
Upstream-355
Matrix_389ILR3Not availableUpstream-357
Upstream-358
Matrix_403BZR1Not availableUpstream-356
Matrix_414AGL15Not availableUpstream-192
Matrix_443AGL15Not availableUpstream-356
Matrix_449BIM2Not availableUpstream-357
Upstream-358
Matrix_465MYC4Not availableUpstream-357
Upstream-358
Matrix_48PINot availableUpstream-248
Matrix_488ABF1Not availableUpstream-350
Upstream-357
Matrix_55PIF3Not availableUpstream-357
Matrix_60AT1G01260;AT5G57150Not availableUpstream-358
Upstream-359
Matrix_64PIF5Not availableUpstream-358
Upstream-359
Matrix_65POC1;PIL1Not availableUpstream-358
Upstream-359
Matrix_7PIF4Not availableUpstream-357
Upstream-358
Upstream-359
Upstream-360
Matrix_77PRR5Not availableUpstream-356
Upstream-357
Matrix_80BIM1Not availableUpstream-357
Upstream-358
Upstream-359
Motif_141BP5OSWXOsBP-5 (a MYC protein) binding site in Wx promoterUpstream-376
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-229
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-359
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-262
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-359
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-357
Upstream-358
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-1
Upstream-358
Upstream-359
Upstream-375
Motif_244ABRE-like binding site motifNot availableUpstream-357
Upstream-359
Motif_288NONAMERMOTIFTAH3H4Nonamer motif found in promoter of wheat histone genes H3 and H4Upstream-378
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-357
Upstream-359
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-357
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-359
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-264
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-358
Upstream-359
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-362
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-358
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-213
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-357
Upstream-360
Upstream-374
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-376
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-522
Upstream-605
Upstream-624
Upstream-838
Upstream-876
Upstream-947
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-265
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-357
Upstream-360
Upstream-374
Motif_638ABRE binding site motifNot availableUpstream-357
Upstream-359
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-356
Upstream-373
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-200
Upstream-202
Upstream-204
Upstream-206
Upstream-218
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-262