Matrix_104 | PI | Not available | Upstream | -357 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -357 |
Matrix_109 | GBF3 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -374 |
Matrix_113 | ABI5 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -354 |
| | | Upstream | -355 |
Matrix_120 | BEE2 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_129 | ABF1 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_134 | ABF1 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -358 |
| | | Upstream | -359 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -354 |
Matrix_156 | POC1 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -357 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -355 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -372 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -355 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_214 | AP1 | Not available | Upstream | -356 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -355 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -372 |
Matrix_233 | MYC3 | Not available | Upstream | -358 |
| | | Upstream | -359 |
Matrix_24 | POC1 | Not available | Upstream | -354 |
Matrix_247 | PIF3 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -374 |
| | | Upstream | -375 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -374 |
| | | Upstream | -375 |
Matrix_264 | ATAREB1 | Not available | Upstream | -355 |
| | | Upstream | -357 |
| | | Upstream | -358 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -248 |
Matrix_296 | GBF2 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -374 |
| | | Upstream | -375 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -374 |
| | | Upstream | -375 |
Matrix_301 | PIL5 | Not available | Upstream | -353 |
| | | Upstream | -359 |
Matrix_323 | BIM3 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_331 | GBF1 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -374 |
Matrix_332 | SPT;ALC | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
Matrix_338 | AP2 | Not available | Upstream | -355 |
Matrix_339 | bHLH104 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_345 | POC1 | Not available | Upstream | -354 |
| | | Upstream | -355 |
Matrix_356 | PRR5 | Not available | Upstream | -351 |
| | | Upstream | -355 |
Matrix_389 | ILR3 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_403 | BZR1 | Not available | Upstream | -356 |
Matrix_414 | AGL15 | Not available | Upstream | -192 |
Matrix_443 | AGL15 | Not available | Upstream | -356 |
Matrix_449 | BIM2 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_465 | MYC4 | Not available | Upstream | -357 |
| | | Upstream | -358 |
Matrix_48 | PI | Not available | Upstream | -248 |
Matrix_488 | ABF1 | Not available | Upstream | -350 |
| | | Upstream | -357 |
Matrix_55 | PIF3 | Not available | Upstream | -357 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -358 |
| | | Upstream | -359 |
Matrix_64 | PIF5 | Not available | Upstream | -358 |
| | | Upstream | -359 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -358 |
| | | Upstream | -359 |
Matrix_7 | PIF4 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -360 |
Matrix_77 | PRR5 | Not available | Upstream | -356 |
| | | Upstream | -357 |
Matrix_80 | BIM1 | Not available | Upstream | -357 |
| | | Upstream | -358 |
| | | Upstream | -359 |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | Upstream | -376 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -229 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -359 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -262 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -359 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -357 |
| | | Upstream | -358 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -1 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -375 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -357 |
| | | Upstream | -359 |
Motif_288 | NONAMERMOTIFTAH3H4 | Nonamer motif found in promoter of wheat histone genes H3 and H4 | Upstream | -378 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -357 |
| | | Upstream | -359 |
Motif_300 | ACGTROOT1;HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA | Upstream | -357 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -359 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -264 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -358 |
| | | Upstream | -359 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -362 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -358 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -213 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -357 |
| | | Upstream | -360 |
| | | Upstream | -374 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -376 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -522 |
| | | Upstream | -605 |
| | | Upstream | -624 |
| | | Upstream | -838 |
| | | Upstream | -876 |
| | | Upstream | -947 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -265 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -357 |
| | | Upstream | -360 |
| | | Upstream | -374 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -357 |
| | | Upstream | -359 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -356 |
| | | Upstream | -373 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -200 |
| | | Upstream | -202 |
| | | Upstream | -204 |
| | | Upstream | -206 |
| | | Upstream | -218 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -262 |