Matrix_104 | PI | Not available | Upstream | -464 |
Matrix_111 | ABF3 | Not available | Upstream | -465 |
| | | Upstream | -466 |
Matrix_119 | RRTF1 | Not available | Upstream | -1978 |
| | | Upstream | -1979 |
| | | Upstream | -1982 |
Matrix_129 | ABF1 | Not available | Upstream | -464 |
| | | Upstream | -465 |
Matrix_134 | ABF1 | Not available | Upstream | -465 |
Matrix_138 | RRTF1 | Not available | Upstream | -1978 |
| | | Upstream | -1979 |
| | | Upstream | -1982 |
Matrix_146 | ORA47 | Not available | Upstream | -1979 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -1983 |
Matrix_190 | ATERF1 | Not available | Upstream | -1979 |
Matrix_234 | RAP2.3 | Not available | Upstream | -351 |
| | | Upstream | -1979 |
| | | Upstream | -1980 |
| | | Upstream | -1981 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1979 |
| | | Upstream | -1980 |
| | | Upstream | -1981 |
Matrix_264 | ATAREB1 | Not available | Upstream | -461 |
| | | Upstream | -462 |
| | | Upstream | -465 |
Matrix_272 | DEAR4 | Not available | Upstream | -1979 |
| | | Upstream | -1980 |
Matrix_288 | RAP2.3 | Not available | Upstream | -1978 |
| | | Upstream | -1979 |
| | | Upstream | -1982 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -1978 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1979 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -1978 |
| | | Upstream | -1979 |
Matrix_363 | RAP2.3 | Not available | Upstream | -1978 |
| | | Upstream | -1979 |
| | | Upstream | -1982 |
Matrix_378 | ATERF1 | Not available | Upstream | -1979 |
| | | Upstream | -1980 |
| | | Upstream | -1981 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1980 |
| | | Upstream | -1981 |
Matrix_473 | RRTF1 | Not available | Upstream | -351 |
| | | Upstream | -1979 |
| | | Upstream | -1980 |
| | | Upstream | -1981 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1979 |
| | | Upstream | -1980 |
Matrix_517 | ERF12 | Not available | Upstream | -1983 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1978 |
| | | Upstream | -1979 |
Matrix_7 | PIF4 | Not available | Upstream | -466 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1980 |
| | | Upstream | -1981 |
| | | Upstream | -1982 |
Matrix_91 | CRF3 | Not available | Upstream | -1979 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -245 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -466 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 1091 |
| | | Upstream | -440 |
| | | Upstream | -466 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -465 |
| | | Upstream | -466 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -464 |
| | | Upstream | -466 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -465 |
| | | Upstream | -466 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -366 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -466 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Downstream | 1066 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -373 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -91 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -467 |
Motif_640 | RYREPEATBNNAPA | RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Downstream | 1196 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -467 |