View conserved binding sites


Gene
GM05G31370
Description
responsive transcription factor RAP2-4
Alias
Glyma05g31370;Glyma05g31370.1;PAC:26322597;Glyma05g31370.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-464
Matrix_111ABF3Not availableUpstream-465
Upstream-466
Matrix_119RRTF1Not availableUpstream-1978
Upstream-1979
Upstream-1982
Matrix_129ABF1Not availableUpstream-464
Upstream-465
Matrix_134ABF1Not availableUpstream-465
Matrix_138RRTF1Not availableUpstream-1978
Upstream-1979
Upstream-1982
Matrix_146ORA47Not availableUpstream-1979
Matrix_147ERF3;AT1G80580Not availableUpstream-1983
Matrix_190ATERF1Not availableUpstream-1979
Matrix_234RAP2.3Not availableUpstream-351
Upstream-1979
Upstream-1980
Upstream-1981
Matrix_252RAP2.6Not availableUpstream-1979
Upstream-1980
Upstream-1981
Matrix_264ATAREB1Not availableUpstream-461
Upstream-462
Upstream-465
Matrix_272DEAR4Not availableUpstream-1979
Upstream-1980
Matrix_288RAP2.3Not availableUpstream-1978
Upstream-1979
Upstream-1982
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1978
Matrix_343AT2G33710Not availableUpstream-1979
Matrix_355ERF10;ERF11Not availableUpstream-1978
Upstream-1979
Matrix_363RAP2.3Not availableUpstream-1978
Upstream-1979
Upstream-1982
Matrix_378ATERF1Not availableUpstream-1979
Upstream-1980
Upstream-1981
Matrix_426CRF1;CRF2Not availableUpstream-1980
Upstream-1981
Matrix_473RRTF1Not availableUpstream-351
Upstream-1979
Upstream-1980
Upstream-1981
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1979
Upstream-1980
Matrix_517ERF12Not availableUpstream-1983
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1978
Upstream-1979
Matrix_7PIF4Not availableUpstream-466
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1980
Upstream-1981
Upstream-1982
Matrix_91CRF3Not availableUpstream-1979
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-245
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-466
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1091
Upstream-440
Upstream-466
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-465
Upstream-466
Motif_244ABRE-like binding site motifNot availableUpstream-464
Upstream-466
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-465
Upstream-466
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-366
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-466
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Downstream1066
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-373
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-91
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-467
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREDownstream1196
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-467