View conserved binding sites


Gene
GM05G30200
Description
Ferredoxin-1
Alias
Glyma05g30200;Glyma05g30200.1;PAC:26319442;Glyma05g30200.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-224
Upstream-225
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-224
Upstream-225
Matrix_109GBF3Not availableUpstream-224
Upstream-225
Upstream-226
Upstream-227
Matrix_113ABI5Not availableUpstream-224
Upstream-225
Upstream-226
Upstream-227
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-137
Upstream-138
Upstream-139
Upstream-221
Upstream-222
Upstream-223
Matrix_120BEE2Not availableUpstream-225
Matrix_122ABF1;AREB2Not availableUpstream-224
Upstream-225
Upstream-226
Matrix_129ABF1Not availableUpstream-225
Upstream-226
Matrix_134ABF1Not availableUpstream-225
Upstream-226
Upstream-227
Matrix_14ZCW32;AT5G62610Not availableUpstream-225
Upstream-226
Upstream-227
Matrix_145GBF4;AT5G44080Not availableUpstream-226
Upstream-227
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-221
Upstream-222
Matrix_156POC1Not availableUpstream-224
Upstream-225
Upstream-226
Upstream-227
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-225
Matrix_192FHY3/FAR1Not availableUpstream-222
Upstream-223
Upstream-226
Upstream-227
Matrix_194HYH;HY5Not availableUpstream-138
Upstream-139
Upstream-222
Upstream-223
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-225
Upstream-226
Matrix_214AP1Not availableUpstream-139
Upstream-140
Upstream-223
Upstream-224
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-222
Upstream-223
Upstream-226
Upstream-227
Matrix_233MYC3Not availableUpstream-226
Matrix_24POC1Not availableUpstream-221
Upstream-222
Matrix_247PIF3Not availableUpstream-141
Upstream-142
Upstream-225
Upstream-226
Matrix_259AT1G50680;AT1G51120Not availableUpstream-225
Matrix_264ATAREB1Not availableUpstream-222
Upstream-223
Upstream-225
Upstream-226
Matrix_296GBF2Not availableUpstream-225
Upstream-226
Upstream-227
Matrix_300bZIP68;bZIP16Not availableUpstream-225
Upstream-226
Upstream-227
Matrix_323BIM3Not availableUpstream-225
Matrix_330MYC2;TT8Not availableUpstream-225
Matrix_331GBF1Not availableUpstream-224
Upstream-225
Upstream-226
Upstream-227
Matrix_332SPT;ALCNot availableUpstream-225
Upstream-226
Upstream-227
Matrix_338AP2Not availableUpstream-138
Upstream-139
Upstream-222
Upstream-223
Matrix_339bHLH104Not availableUpstream-225
Matrix_345POC1Not availableUpstream-137
Upstream-138
Upstream-139
Upstream-221
Upstream-222
Upstream-223
Matrix_356PRR5Not availableUpstream-218
Upstream-219
Upstream-222
Upstream-223
Matrix_369AT2G18300Not availableUpstream-223
Upstream-225
Matrix_389ILR3Not availableUpstream-225
Upstream-226
Matrix_403BZR1Not availableUpstream-223
Upstream-224
Matrix_438AtbZIP63Not availableUpstream-223
Upstream-225
Matrix_440LFYNot availableUpstream-140
Matrix_443AGL15Not availableUpstream-223
Upstream-224
Matrix_449BIM2Not availableUpstream-225
Matrix_465MYC4Not availableUpstream-225
Matrix_488ABF1Not availableUpstream-133
Upstream-134
Upstream-217
Upstream-218
Upstream-224
Upstream-225
Upstream-473
Matrix_511AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180Not availableUpstream-141
Matrix_53MYC3Not availableUpstream-223
Upstream-227
Matrix_55PIF3Not availableUpstream-224
Upstream-225
Matrix_60AT1G01260;AT5G57150Not availableUpstream-226
Matrix_64PIF5Not availableUpstream-226
Upstream-227
Matrix_65POC1;PIL1Not availableUpstream-226
Upstream-227
Matrix_7PIF4Not availableUpstream-225
Upstream-226
Upstream-227
Upstream-228
Matrix_77PRR5Not availableUpstream-223
Upstream-224
Upstream-225
Matrix_80BIM1Not availableUpstream-224
Upstream-226
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-826
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-878
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Upstream-718
Upstream-842
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-778
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-227
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-143
Upstream-227
Upstream-878
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-225
Upstream-226
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-159
Upstream-226
Upstream-227
Upstream-243
Motif_244ABRE-like binding site motifNot availableUpstream-225
Upstream-227
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-877
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-127
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-225
Upstream-227
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-129
Upstream-213
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-225
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-135
Upstream-219
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-159
Upstream-243
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-169
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-106
Upstream-227
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-168
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-878
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-226
Upstream-227
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-779
Motif_467VOZ binding siteNot availableUpstream-152
Upstream-236
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-226
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-225
Upstream-228
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-225
Upstream-228
Motif_638ABRE binding site motifNot availableUpstream-225
Upstream-227
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-224
Upstream-228
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-143
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-171
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-130
Upstream-214