View conserved binding sites


Gene
GM05G30020
Description
YTH domain family protein
Alias
Glyma05g30020;Glyma05g30020.1;PAC:26320584;Glyma05g30020.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-191
Upstream-192
Matrix_104PINot availableUpstream-345
Upstream-346
Upstream-1275
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-345
Upstream-346
Matrix_109GBF3Not availableUpstream-345
Upstream-346
Upstream-347
Upstream-348
Matrix_110ATABI4;AT3G57600Not availableUpstream-190
Upstream-191
Matrix_113ABI5Not availableUpstream-345
Upstream-346
Upstream-347
Upstream-348
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-342
Upstream-343
Upstream-344
Matrix_119RRTF1Not availableUpstream-192
Upstream-193
Matrix_120BEE2Not availableUpstream-346
Upstream-347
Matrix_122ABF1;AREB2Not availableUpstream-345
Upstream-346
Upstream-347
Matrix_129ABF1Not availableUpstream-346
Upstream-347
Matrix_134ABF1Not availableUpstream-346
Upstream-347
Upstream-348
Matrix_138RRTF1Not availableUpstream-192
Upstream-193
Matrix_14ZCW32;AT5G62610Not availableUpstream-346
Upstream-347
Upstream-348
Matrix_145GBF4;AT5G44080Not availableUpstream-347
Upstream-348
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-342
Matrix_156POC1Not availableUpstream-345
Upstream-346
Upstream-347
Upstream-348
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-346
Upstream-347
Matrix_169E2F1Not availableUpstream-350
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-343
Matrix_190ATERF1Not availableUpstream-190
Upstream-191
Matrix_192FHY3/FAR1Not availableUpstream-343
Upstream-344
Upstream-347
Upstream-348
Matrix_194HYH;HY5Not availableUpstream-343
Upstream-344
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-346
Upstream-347
Matrix_214AP1Not availableUpstream-344
Upstream-345
Upstream-1274
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-343
Upstream-344
Upstream-347
Upstream-348
Matrix_224ERF1Not availableUpstream-192
Upstream-193
Matrix_233MYC3Not availableUpstream-347
Upstream-348
Matrix_234RAP2.3Not availableUpstream-191
Upstream-192
Matrix_24POC1Not availableUpstream-342
Matrix_247PIF3Not availableUpstream-346
Upstream-347
Matrix_25AP3Not availableUpstream-140
Matrix_252RAP2.6Not availableUpstream-191
Upstream-192
Matrix_259AT1G50680;AT1G51120Not availableUpstream-346
Upstream-347
Matrix_261ATERF-1Not availableUpstream-192
Upstream-193
Matrix_264ATAREB1Not availableUpstream-343
Upstream-344
Upstream-346
Upstream-347
Matrix_277RAP2.6Not availableUpstream-192
Upstream-193
Matrix_287ERF2Not availableUpstream-191
Upstream-192
Matrix_288RAP2.3Not availableUpstream-192
Upstream-193
Matrix_295ERF1Not availableUpstream-193
Upstream-194
Matrix_296GBF2Not availableUpstream-346
Upstream-347
Upstream-348
Matrix_300bZIP68;bZIP16Not availableUpstream-346
Upstream-347
Upstream-348
Matrix_301PIL5Not availableUpstream-341
Upstream-342
Upstream-347
Upstream-348
Matrix_323BIM3Not availableUpstream-346
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-192
Upstream-193
Matrix_330MYC2;TT8Not availableUpstream-346
Matrix_331GBF1Not availableUpstream-345
Upstream-346
Upstream-347
Upstream-348
Matrix_332SPT;ALCNot availableUpstream-346
Upstream-347
Upstream-348
Matrix_334AT3G23230Not availableUpstream-192
Upstream-193
Matrix_338AP2Not availableUpstream-343
Upstream-344
Matrix_339bHLH104Not availableUpstream-346
Matrix_343AT2G33710Not availableUpstream-191
Upstream-192
Matrix_345POC1Not availableUpstream-342
Upstream-343
Matrix_355ERF10;ERF11Not availableUpstream-192
Upstream-193
Matrix_356PRR5Not availableUpstream-339
Upstream-340
Upstream-344
Matrix_359FLCNot availableUpstream-344
Upstream-345
Matrix_360ORA59Not availableUpstream-190
Upstream-191
Upstream-193
Upstream-194
Matrix_363RAP2.3Not availableUpstream-192
Upstream-193
Matrix_369AT2G18300Not availableUpstream-344
Upstream-345
Upstream-346
Upstream-347
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-138
Upstream-140
Matrix_374AT5G07580;AT5G61590Not availableUpstream-192
Upstream-193
Upstream-913
Matrix_378ATERF1Not availableUpstream-191
Upstream-192
Matrix_388SNZ;SMZ;TOE2Not availableUpstream-529
Matrix_389ILR3Not availableUpstream-346
Upstream-347
Matrix_396AP3Not availableUpstream-499
Matrix_403BZR1Not availableUpstream-344
Upstream-345
Matrix_405DREB2CNot availableUpstream-190
Upstream-191
Matrix_406ATERF-7Not availableUpstream-193
Upstream-194
Matrix_408GATA12Not availableDownstream3745
Matrix_414AGL15Not availableUpstream-159
Upstream-161
Matrix_416ASL5Not availableUpstream-296
Matrix_426CRF1;CRF2Not availableUpstream-192
Upstream-193
Upstream-916
Matrix_438AtbZIP63Not availableUpstream-344
Upstream-346
Matrix_443AGL15Not availableUpstream-344
Upstream-345
Upstream-1274
Matrix_449BIM2Not availableUpstream-346
Matrix_465MYC4Not availableUpstream-346
Upstream-347
Matrix_473RRTF1Not availableUpstream-191
Upstream-192
Matrix_48PINot availableUpstream-217
Matrix_480BES1Not availableUpstream-346
Upstream-347
Matrix_484ATERF13Not availableUpstream-193
Upstream-194
Matrix_488ABF1Not availableUpstream-338
Matrix_497AP3Not availableUpstream-208
Matrix_50ATERF14;AT5G43410Not availableUpstream-192
Upstream-193
Matrix_506DRNL;ATERF-4Not availableUpstream-192
Upstream-193
Upstream-916
Matrix_514DYT1Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen developmentUpstream-344
Matrix_53MYC3Not availableUpstream-344
Upstream-345
Upstream-348
Upstream-349
Matrix_55PIF3Not availableUpstream-345
Upstream-346
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-347
Matrix_60AT1G01260;AT5G57150Not availableUpstream-347
Upstream-348
Matrix_64PIF5Not availableUpstream-347
Upstream-348
Matrix_65POC1;PIL1Not availableUpstream-347
Upstream-348
Matrix_7PIF4Not availableUpstream-346
Upstream-347
Upstream-348
Upstream-349
Matrix_77PRR5Not availableUpstream-344
Upstream-345
Upstream-346
Matrix_80BIM1Not availableUpstream-345
Upstream-346
Upstream-347
Upstream-348
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-192
Matrix_91CRF3Not availableUpstream-192
Upstream-193
Matrix_95LFYNot availableUpstream-291
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-103
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-316
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-210
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-348
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream4266
Upstream-180
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream4266
Upstream-348
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-346
Upstream-347
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-347
Upstream-348
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream4266
Downstream3586
Upstream-180
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-112
Upstream-500
Motif_244ABRE-like binding site motifNot availableUpstream-346
Upstream-348
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesDownstream3716
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-346
Upstream-348
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-346
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Downstream3419
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream3402
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-194
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-193
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesDownstream3576
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream4266
Upstream-180
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-348
Upstream-602
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisDownstream3606
Upstream-112
Upstream-500
Motif_419MYB4 binding site motifNot availableDownstream3716
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-347
Upstream-348
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-345
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneUpstream-301
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-347
Motif_504LFYStructural basis for LEAFY floral switch function and similarity with helix-turn-helix proteinsUpstream-326
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-278
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-346
Upstream-349
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-229
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-147
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream3575
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-346
Upstream-349
Motif_638ABRE binding site motifNot availableUpstream-346
Upstream-348
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream3804
Downstream3401
Upstream-146
Upstream-319
Upstream-320
Upstream-512
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-229
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-146
Motif_683AtMYB2 BS in RD22Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expressionDownstream3576
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-159
Upstream-161
Upstream-1631
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-350
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-207