Matrix_119 | RRTF1 | Not available | Upstream | -157 |
Matrix_138 | RRTF1 | Not available | Upstream | -157 |
Matrix_224 | ERF1 | Not available | Upstream | -157 |
Matrix_234 | RAP2.3 | Not available | Upstream | -156 |
Matrix_25 | AP3 | Not available | Upstream | -189 |
Matrix_261 | ATERF-1 | Not available | Upstream | -156 |
Matrix_277 | RAP2.6 | Not available | Upstream | -157 |
Matrix_287 | ERF2 | Not available | Upstream | -156 |
Matrix_288 | RAP2.3 | Not available | Upstream | -157 |
Matrix_295 | ERF1 | Not available | Upstream | -156 |
Matrix_298 | RAV1 | Not available | Upstream | -162 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -157 |
Matrix_334 | AT3G23230 | Not available | Upstream | -155 |
Matrix_343 | AT2G33710 | Not available | Upstream | -156 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -157 |
Matrix_36 | RAV1_1 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -162 |
Matrix_360 | ORA59 | Not available | Upstream | -156 |
Matrix_363 | RAP2.3 | Not available | Upstream | -157 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -156 |
Matrix_378 | ATERF1 | Not available | Upstream | -156 |
Matrix_396 | AP3 | Not available | Intron | 202 |
| | | Intron | 622 |
Matrix_406 | ATERF-7 | Not available | Upstream | -158 |
Matrix_413 | RAV1 | Not available | Upstream | -162 |
Matrix_414 | AGL15 | Not available | Upstream | -104 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -155 |
Matrix_473 | RRTF1 | Not available | Upstream | -156 |
Matrix_48 | PI | Not available | Upstream | -263 |
Matrix_484 | ATERF13 | Not available | Upstream | -156 |
Matrix_489 | RAV1 | Not available | Upstream | -160 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -156 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -157 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -155 |
Matrix_91 | CRF3 | Not available | Upstream | -156 |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Downstream | 4017 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -653 |
Motif_153 | MARABOX1 | A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR) | Upstream | -303 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -645 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -155 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -155 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -646 |
| | | Upstream | -304 |
| | | Upstream | -300 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -660 |
| | | Upstream | -303 |
| | | Upstream | -299 |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | Upstream | -157 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Upstream | -156 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -658 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -216 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 3926 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -259 |
| | | Upstream | -149 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -207 |