View conserved binding sites


Gene
GM05G26620
Description
CCCH domain-containing protein 17
Alias
Glyma05g26620;Glyma05g26620.1;PAC:26320033;Glyma05g26620.1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-157
Matrix_138RRTF1Not availableUpstream-157
Matrix_224ERF1Not availableUpstream-157
Matrix_234RAP2.3Not availableUpstream-156
Matrix_25AP3Not availableUpstream-189
Matrix_261ATERF-1Not availableUpstream-156
Matrix_277RAP2.6Not availableUpstream-157
Matrix_287ERF2Not availableUpstream-156
Matrix_288RAP2.3Not availableUpstream-157
Matrix_295ERF1Not availableUpstream-156
Matrix_298RAV1Not availableUpstream-162
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-157
Matrix_334AT3G23230Not availableUpstream-155
Matrix_343AT2G33710Not availableUpstream-156
Matrix_355ERF10;ERF11Not availableUpstream-157
Matrix_36RAV1_1RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-162
Matrix_360ORA59Not availableUpstream-156
Matrix_363RAP2.3Not availableUpstream-157
Matrix_374AT5G07580;AT5G61590Not availableUpstream-156
Matrix_378ATERF1Not availableUpstream-156
Matrix_396AP3Not availableIntron202
Intron622
Matrix_406ATERF-7Not availableUpstream-158
Matrix_413RAV1Not availableUpstream-162
Matrix_414AGL15Not availableUpstream-104
Matrix_426CRF1;CRF2Not availableUpstream-155
Matrix_473RRTF1Not availableUpstream-156
Matrix_48PINot availableUpstream-263
Matrix_484ATERF13Not availableUpstream-156
Matrix_489RAV1Not availableUpstream-160
Matrix_493AT1G22985;AT1G71130Not availableUpstream-156
Matrix_50ATERF14;AT5G43410Not availableUpstream-157
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-155
Matrix_91CRF3Not availableUpstream-156
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexDownstream4017
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-653
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Upstream-303
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-645
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-155
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-155
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-646
Upstream-304
Upstream-300
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-660
Upstream-303
Upstream-299
Motif_402AtTINY2Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thalianaUpstream-157
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-156
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-658
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-216
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream3926
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-259
Upstream-149
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-207