Matrix_101 | ERF5 | Not available | Upstream | -286 |
Matrix_102 | WRKY21 | Not available | Upstream | -307 |
Matrix_119 | RRTF1 | Not available | Upstream | -287 |
Matrix_138 | RRTF1 | Not available | Upstream | -287 |
Matrix_146 | ORA47 | Not available | Upstream | -286 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -286 |
Matrix_148 | WRKY60 | Not available | Upstream | -308 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -285 |
Matrix_17 | WRKY22 | Not available | Upstream | -307 |
Matrix_190 | ATERF1 | Not available | Upstream | -286 |
| | | Upstream | -285 |
Matrix_197 | NAP | Not available | Upstream | -307 |
Matrix_202 | WRKY71;WRKY28;WRKY8 | Not available | Upstream | -307 |
Matrix_207 | WRKY10;WRKY57;AT2G44745;ATWRKY13;WRKY49 | Not available | Upstream | -307 |
Matrix_220 | WRKY18 | Not available | Upstream | -307 |
Matrix_224 | ERF1 | Not available | Upstream | -287 |
Matrix_232 | TCP23 | Not available | Upstream | -286 |
Matrix_234 | RAP2.3 | Not available | Upstream | -286 |
Matrix_235 | WRKY67;WRKY64;WRKY63;WRKY66 | Not available | Upstream | -306 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -285 |
Matrix_249 | WRKY11 | Not available | Upstream | -308 |
Matrix_25 | AP3 | Not available | Upstream | -357 |
Matrix_252 | RAP2.6 | Not available | Upstream | -286 |
Matrix_261 | ATERF-1 | Not available | Upstream | -286 |
Matrix_263 | WRKY33;WRKY19;WRKY32 | Not available | Upstream | -307 |
Matrix_272 | DEAR4 | Not available | Upstream | -286 |
Matrix_277 | RAP2.6 | Not available | Upstream | -287 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -285 |
Matrix_287 | ERF2 | Not available | Upstream | -286 |
Matrix_288 | RAP2.3 | Not available | Upstream | -287 |
Matrix_293 | WRKY38 | Not available | Upstream | -308 |
Matrix_295 | ERF1 | Not available | Upstream | -286 |
Matrix_3 | WRKY48 | Not available | Upstream | -307 |
Matrix_314 | WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52 | Not available | Upstream | -308 |
Matrix_316 | WRKY15;WRKY39;WRKY7;WRKY74 | Not available | Upstream | -308 |
Matrix_321 | HRD | Not available | Upstream | -286 |
Matrix_325 | WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2 | Not available | Upstream | -306 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -287 |
Matrix_329 | WRKY12 | Not available | Upstream | -308 |
Matrix_334 | AT3G23230 | Not available | Upstream | -285 |
Matrix_343 | AT2G33710 | Not available | Upstream | -286 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -286 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -287 |
Matrix_357 | WRKY61;WRKY6;WRKY9;WRKY36;WRKY47;WRKY42;WRKY31;WRKY72 | Not available | Upstream | -308 |
Matrix_360 | ORA59 | Not available | Upstream | -286 |
Matrix_363 | RAP2.3 | Not available | Upstream | -287 |
Matrix_370 | WRKY50;WRKY51 | Not available | Upstream | -307 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -286 |
Matrix_376 | WRKY45 | Not available | Upstream | -308 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -286 |
Matrix_378 | ATERF1 | Not available | Upstream | -286 |
Matrix_384 | ATWRKY17 | Not available | Upstream | -307 |
Matrix_405 | DREB2C | Not available | Upstream | -285 |
Matrix_406 | ATERF-7 | Not available | Upstream | -288 |
Matrix_415 | WRKY27 | Not available | Upstream | -307 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -285 |
Matrix_462 | ATERF-8 | Not available | Upstream | -288 |
Matrix_473 | RRTF1 | Not available | Upstream | -286 |
Matrix_48 | PI | Not available | Upstream | -255 |
Matrix_484 | ATERF13 | Not available | Upstream | -286 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -286 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -287 |
Matrix_500 | WRKY43 | Not available | Upstream | -308 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -285 |
Matrix_58 | WRKY55;ATWRKY54;WRKY46;WRKY70;AtWRKY41;WRKY53;WRKY30 | Not available | Upstream | -309 |
Matrix_59 | AT4G00238;AT4G00250 | Not available | Upstream | -287 |
Matrix_75 | WRKY29 | Not available | Upstream | -307 |
Matrix_78 | AT3G45610 | Not available | Upstream | -272 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -285 |
Matrix_91 | CRF3 | Not available | Upstream | -286 |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Upstream | -261 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -134 |
| | | Upstream | -132 |
| | | Upstream | -130 |
| | | Upstream | -128 |
| | | Upstream | -126 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -1901 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Intron | 546 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -272 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -272 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -305 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -1892 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -137 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -285 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Intron | 973 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -272 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Intron | 974 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -136 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -263 |
Motif_421 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | Upstream | -141 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -134 |
| | | Upstream | -132 |
| | | Upstream | -130 |
| | | Upstream | -128 |
| | | Upstream | -126 |
| | | Upstream | -124 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Upstream | -346 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -295 |
Motif_606 | NAPINMOTIFBN | Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds | Upstream | -758 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Intron | 969 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -262 |
Motif_640 | RYREPEATBNNAPA | RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Intron | 597 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -247 |
| | | Upstream | -134 |
| | | Upstream | -132 |
| | | Upstream | -130 |
| | | Upstream | -128 |
| | | Upstream | -126 |
| | | Upstream | -124 |
| | | Upstream | -122 |
| | | Upstream | -120 |
| | | Upstream | -118 |
| | | Upstream | -116 |