View conserved binding sites


Gene
GM04G40080
Description
inactive leucine-rich repeat receptor-like protein kinase At3g28040
Alias
Glyma04g40080;Glyma04g40080.1;PAC:26304333;Glyma04g40080.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-685
Matrix_109GBF3Not availableUpstream-685
Upstream-687
Matrix_113ABI5Not availableUpstream-685
Upstream-687
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-682
Upstream-683
Matrix_120BEE2Not availableUpstream-686
Matrix_122ABF1;AREB2Not availableUpstream-685
Upstream-686
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-649
Matrix_129ABF1Not availableUpstream-686
Matrix_130TCP16Not availableUpstream-645
Upstream-646
Matrix_134ABF1Not availableUpstream-686
Upstream-687
Matrix_145GBF4;AT5G44080Not availableUpstream-687
Matrix_148WRKY60Not availableDownstream3793
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-682
Upstream-851
Matrix_151ASIL1Not availableUpstream-538
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-538
Upstream-540
Matrix_156POC1Not availableUpstream-685
Upstream-687
Matrix_176MYB98Not availableUpstream-145
Matrix_192FHY3/FAR1Not availableUpstream-683
Upstream-687
Upstream-725
Upstream-726
Matrix_194HYH;HY5Not availableUpstream-683
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-686
Matrix_201AT1G74840Not availableDownstream3794
Matrix_214AP1Not availableUpstream-684
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-683
Upstream-687
Matrix_237MYB55Not availableUpstream-651
Matrix_24POC1Not availableUpstream-682
Upstream-851
Matrix_247PIF3Not availableUpstream-686
Matrix_259AT1G50680;AT1G51120Not availableUpstream-686
Matrix_264ATAREB1Not availableUpstream-683
Upstream-686
Matrix_269FHY3/FAR1Not availableDownstream3803
Matrix_278AtbZIP44Not availableUpstream-727
Matrix_281TCP13Not availableUpstream-645
Matrix_294MEE35Not availableUpstream-645
Matrix_296GBF2Not availableUpstream-686
Upstream-687
Matrix_300bZIP68;bZIP16Not availableUpstream-686
Upstream-687
Matrix_301PIL5Not availableUpstream-681
Upstream-687
Matrix_331GBF1Not availableUpstream-685
Upstream-687
Matrix_332SPT;ALCNot availableUpstream-686
Upstream-687
Matrix_338AP2Not availableUpstream-683
Matrix_345POC1Not availableUpstream-682
Upstream-683
Matrix_356PRR5Not availableUpstream-679
Upstream-683
Matrix_389ILR3Not availableUpstream-686
Matrix_399TGA1Not availableUpstream-729
Matrix_403BZR1Not availableUpstream-684
Matrix_406ATERF-7Not availableUpstream-537
Upstream-539
Matrix_438AtbZIP63Not availableUpstream-728
Upstream-729
Matrix_443AGL15Not availableUpstream-684
Matrix_456bZIP60Not availableUpstream-728
Matrix_457TGA2Not availableUpstream-730
Matrix_488ABF1Not availableUpstream-678
Upstream-685
Matrix_507TCP3Not availableUpstream-644
Matrix_517ERF12Not availableUpstream-539
Matrix_55PIF3Not availableUpstream-685
Matrix_65POC1;PIL1Not availableUpstream-687
Matrix_7PIF4Not availableUpstream-686
Upstream-687
Upstream-688
Matrix_77PRR5Not availableUpstream-684
Upstream-685
Matrix_82TCP17Not availableUpstream-645
Matrix_94TCP5Not availableUpstream-645
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxDownstream4568
Upstream-162
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterDownstream4665
Downstream4634
Motif_131P1BSPHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtiiUpstream-693
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-625
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFDownstream3958
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Downstream3795
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-687
Upstream-1009
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-147
Upstream-488
Upstream-633
Upstream-744
Upstream-988
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-653
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-687
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-685
Upstream-686
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionUpstream-351
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-686
Upstream-687
Upstream-1008
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-633
Upstream-652
Upstream-744
Motif_244ABRE-like binding site motifNot availableUpstream-685
Upstream-687
Upstream-728
Upstream-757
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesDownstream4471
Upstream-653
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream4636
Downstream4460
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-685
Upstream-687
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-653
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-660
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-147
Upstream-488
Upstream-633
Upstream-744
Upstream-988
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-687
Upstream-730
Upstream-757
Upstream-1009
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-628
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisDownstream4423
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesDownstream4659
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-115
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-756
Motif_419MYB4 binding site motifNot availableUpstream-83
Upstream-653
Motif_425ANAC013;ANAC016;ANAC017;ANAC053;ANAC078A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thalianaUpstream-721
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-653
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-756
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-686
Upstream-687
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-731
Upstream-756
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisDownstream4471
Upstream-653
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionDownstream3803
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-685
Upstream-688
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteDownstream3956
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-731
Upstream-756
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-114
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-685
Upstream-688
Upstream-728
Motif_638ABRE binding site motifNot availableUpstream-685
Upstream-687
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-684
Upstream-688
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-559
Upstream-561
Upstream-577
Upstream-594
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-728
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-163
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisUpstream-744
Motif_93RGATAOSR-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOSUpstream-289
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Downstream3787