View conserved binding sites


Gene
GM04G38990
Description
NAC transcription factor NAM
Alias
Glyma04g38990;Glyma04g38990.1;PAC:26305827;Glyma04g38990.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-149
Matrix_119RRTF1Not availableUpstream-148
Matrix_138RRTF1Not availableUpstream-148
Matrix_146ORA47Not availableUpstream-149
Matrix_147ERF3;AT1G80580Not availableUpstream-147
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-148
Matrix_224ERF1Not availableUpstream-148
Matrix_234RAP2.3Not availableUpstream-149
Matrix_252RAP2.6Not availableUpstream-149
Matrix_261ATERF-1Not availableUpstream-148
Matrix_272DEAR4Not availableUpstream-149
Matrix_287ERF2Not availableUpstream-149
Matrix_288RAP2.3Not availableUpstream-148
Matrix_295ERF1Not availableUpstream-147
Matrix_321HRDNot availableUpstream-148
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-148
Matrix_334AT3G23230Not availableUpstream-148
Matrix_343AT2G33710Not availableUpstream-149
Matrix_355ERF10;ERF11Not availableUpstream-148
Matrix_360ORA59Not availableUpstream-147
Matrix_363RAP2.3Not availableUpstream-148
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-148
Matrix_378ATERF1Not availableUpstream-149
Matrix_406ATERF-7Not availableUpstream-147
Matrix_409DEAR3Not availableUpstream-148
Matrix_426CRF1;CRF2Not availableUpstream-148
Matrix_45DRNNot availableUpstream-147
Matrix_462ATERF-8Not availableUpstream-147
Matrix_473RRTF1Not availableUpstream-149
Matrix_484ATERF13Not availableUpstream-147
Matrix_493AT1G22985;AT1G71130Not availableUpstream-148
Matrix_50ATERF14;AT5G43410Not availableUpstream-148
Matrix_506DRNL;ATERF-4Not availableUpstream-148
Matrix_517ERF12Not availableUpstream-147
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-148
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-148
Matrix_91CRF3Not availableUpstream-148
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-146
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-1328
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-1328
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-90