Matrix_101 | ERF5 | Not available | Upstream | -115 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -114 |
Matrix_119 | RRTF1 | Not available | Upstream | -116 |
Matrix_138 | RRTF1 | Not available | Upstream | -116 |
Matrix_146 | ORA47 | Not available | Upstream | -115 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -115 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -114 |
Matrix_190 | ATERF1 | Not available | Upstream | -114 |
Matrix_224 | ERF1 | Not available | Upstream | -116 |
Matrix_234 | RAP2.3 | Not available | Upstream | -115 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -114 |
Matrix_252 | RAP2.6 | Not available | Upstream | -115 |
Matrix_261 | ATERF-1 | Not available | Upstream | -115 |
Matrix_272 | DEAR4 | Not available | Upstream | -115 |
Matrix_287 | ERF2 | Not available | Upstream | -115 |
Matrix_288 | RAP2.3 | Not available | Upstream | -116 |
Matrix_295 | ERF1 | Not available | Upstream | -115 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -100 |
Matrix_321 | HRD | Not available | Upstream | -115 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -116 |
Matrix_334 | AT3G23230 | Not available | Upstream | -114 |
Matrix_343 | AT2G33710 | Not available | Upstream | -115 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -116 |
Matrix_360 | ORA59 | Not available | Upstream | -115 |
Matrix_363 | RAP2.3 | Not available | Upstream | -116 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -115 |
Matrix_378 | ATERF1 | Not available | Upstream | -115 |
Matrix_409 | DEAR3 | Not available | Upstream | -116 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -114 |
Matrix_45 | DRN | Not available | Upstream | -115 |
Matrix_473 | RRTF1 | Not available | Upstream | -115 |
Matrix_484 | ATERF13 | Not available | Upstream | -115 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -115 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -116 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -114 |
Matrix_517 | ERF12 | Not available | Upstream | -115 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -116 |
| | | Upstream | -45 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -114 |
Matrix_91 | CRF3 | Not available | Upstream | -115 |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | Upstream | -97 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -39 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -96 |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Downstream | 7489 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -114 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 7480 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 7479 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -46 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -96 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Downstream | 7490 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Downstream | 7478 |