View conserved binding sites


Gene
GM04G34450
Description
Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
Alias
Glyma04g34450;Glyma04g34450.2;PAC:26305510;Glyma04g34450.2
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-74
Matrix_138RRTF1Not availableUpstream-74
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-71
Matrix_224ERF1Not availableUpstream-74
Matrix_234RAP2.3Not availableUpstream-75
Matrix_252RAP2.6Not availableUpstream-75
Matrix_261ATERF-1Not availableUpstream-74
Matrix_272DEAR4Not availableUpstream-75
Matrix_277RAP2.6Not availableUpstream-74
Matrix_288RAP2.3Not availableUpstream-74
Matrix_295ERF1Not availableUpstream-73
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-74
Matrix_334AT3G23230Not availableUpstream-74
Matrix_343AT2G33710Not availableUpstream-75
Matrix_355ERF10;ERF11Not availableUpstream-74
Matrix_360ORA59Not availableUpstream-73
Matrix_363RAP2.3Not availableUpstream-74
Matrix_374AT5G07580;AT5G61590Not availableUpstream-74
Matrix_378ATERF1Not availableUpstream-75
Matrix_406ATERF-7Not availableUpstream-73
Matrix_426CRF1;CRF2Not availableUpstream-74
Matrix_462ATERF-8Not availableUpstream-73
Matrix_484ATERF13Not availableUpstream-73
Matrix_493AT1G22985;AT1G71130Not availableUpstream-74
Matrix_50ATERF14;AT5G43410Not availableUpstream-74
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-74
Matrix_91CRF3Not availableUpstream-74
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-72
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-154
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-73
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-74
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3186
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3186