Matrix_101 | ERF5 | Not available | Upstream | -71 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -357 |
Matrix_113 | ABI5 | Not available | Upstream | -359 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -355 |
Matrix_119 | RRTF1 | Not available | Upstream | -70 |
| | | Upstream | -71 |
Matrix_120 | BEE2 | Not available | Upstream | -358 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -357 |
Matrix_138 | RRTF1 | Not available | Upstream | -70 |
| | | Upstream | -71 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -359 |
Matrix_146 | ORA47 | Not available | Upstream | -71 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -71 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -69 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -72 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -358 |
Matrix_186 | FHY3 | Not available | Upstream | -356 |
Matrix_190 | ATERF1 | Not available | Upstream | -71 |
| | | Upstream | -72 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -284 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -358 |
Matrix_224 | ERF1 | Not available | Upstream | -70 |
| | | Upstream | -71 |
| | | Upstream | -73 |
| | | Upstream | -74 |
| | | Upstream | -868 |
Matrix_233 | MYC3 | Not available | Upstream | -359 |
Matrix_234 | RAP2.3 | Not available | Upstream | -71 |
| | | Upstream | -72 |
| | | Upstream | -73 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -72 |
Matrix_244 | DREB2C | Not available | Upstream | -70 |
Matrix_247 | PIF3 | Not available | Upstream | -358 |
Matrix_252 | RAP2.6 | Not available | Upstream | -71 |
Matrix_260 | CAMTA3 | Not available | Upstream | -279 |
Matrix_261 | ATERF-1 | Not available | Upstream | -71 |
Matrix_268 | EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105 | Not available | Upstream | -71 |
Matrix_272 | DEAR4 | Not available | Upstream | -71 |
Matrix_277 | RAP2.6 | Not available | Upstream | -70 |
| | | Upstream | -71 |
| | | Upstream | -868 |
Matrix_287 | ERF2 | Not available | Upstream | -71 |
| | | Upstream | -72 |
| | | Upstream | -869 |
Matrix_288 | RAP2.3 | Not available | Upstream | -70 |
| | | Upstream | -71 |
Matrix_295 | ERF1 | Not available | Upstream | -71 |
| | | Upstream | -72 |
| | | Upstream | -74 |
| | | Upstream | -75 |
| | | Upstream | -869 |
Matrix_320 | MYC4 | Not available | Upstream | -359 |
| | | Upstream | -1735 |
Matrix_321 | HRD | Not available | Upstream | -71 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -70 |
| | | Upstream | -71 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -358 |
Matrix_332 | SPT;ALC | Not available | Upstream | -359 |
Matrix_334 | AT3G23230 | Not available | Upstream | -72 |
| | | Upstream | -73 |
Matrix_343 | AT2G33710 | Not available | Upstream | -71 |
| | | Upstream | -72 |
| | | Upstream | -869 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -70 |
| | | Upstream | -71 |
Matrix_360 | ORA59 | Not available | Upstream | -71 |
| | | Upstream | -72 |
| | | Upstream | -74 |
| | | Upstream | -75 |
| | | Upstream | -869 |
Matrix_363 | RAP2.3 | Not available | Upstream | -70 |
| | | Upstream | -71 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -359 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -71 |
| | | Upstream | -72 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -71 |
Matrix_378 | ATERF1 | Not available | Upstream | -71 |
| | | Upstream | -72 |
| | | Upstream | -869 |
Matrix_389 | ILR3 | Not available | Upstream | -358 |
Matrix_403 | BZR1 | Not available | Upstream | -356 |
Matrix_405 | DREB2C | Not available | Upstream | -72 |
Matrix_406 | ATERF-7 | Not available | Upstream | -69 |
| | | Upstream | -72 |
Matrix_409 | DEAR3 | Not available | Upstream | -70 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -72 |
| | | Upstream | -73 |
Matrix_448 | ATERF6 | Not available | Upstream | -73 |
Matrix_45 | DRN | Not available | Upstream | -71 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -70 |
Matrix_462 | ATERF-8 | Not available | Upstream | -69 |
| | | Upstream | -72 |
Matrix_465 | MYC4 | Not available | Upstream | -358 |
Matrix_473 | RRTF1 | Not available | Upstream | -71 |
| | | Upstream | -72 |
| | | Upstream | -73 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -359 |
Matrix_480 | BES1 | Not available | Upstream | -358 |
Matrix_484 | ATERF13 | Not available | Upstream | -71 |
| | | Upstream | -72 |
| | | Upstream | -74 |
| | | Upstream | -75 |
| | | Upstream | -869 |
Matrix_49 | FHY3/FAR1 | Not available | Upstream | -354 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -71 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -74 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -70 |
| | | Upstream | -71 |
| | | Upstream | -73 |
| | | Upstream | -74 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -72 |
Matrix_517 | ERF12 | Not available | Upstream | -71 |
Matrix_55 | PIF3 | Not available | Upstream | -357 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -70 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -359 |
Matrix_7 | PIF4 | Not available | Upstream | -360 |
Matrix_77 | PRR5 | Not available | Upstream | -356 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -72 |
| | | Upstream | -73 |
Matrix_91 | CRF3 | Not available | Upstream | -71 |
Motif_12 | CEREGLUBOX2PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | Upstream | -1562 |
Motif_134 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -222 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -232 |
| | | Upstream | -358 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -359 |
| | | Upstream | -1735 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -103 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -194 |
| | | Upstream | -358 |
| | | Upstream | -359 |
| | | Upstream | -1406 |
| | | Upstream | -1735 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -285 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -72 |
| | | Upstream | -75 |
| | | Upstream | -869 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -281 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -869 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -359 |
| | | Upstream | -1735 |
Motif_349 | QARBNEXTA | QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene | Upstream | -194 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -359 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -69 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -382 |
| | | Upstream | -1375 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -217 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -700 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -382 |
| | | Upstream | -1375 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Downstream | 1746 |
| | | Downstream | 1745 |
| | | Downstream | 1744 |