View conserved binding sites


Gene
GM04G06095
Description
Ethylene-responsive transcription factor
Alias
Glyma04g06095;Glyma04g06095.1;PAC:26303805;Glyma04g06095.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-71
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-357
Matrix_113ABI5Not availableUpstream-359
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-355
Matrix_119RRTF1Not availableUpstream-70
Upstream-71
Matrix_120BEE2Not availableUpstream-358
Matrix_122ABF1;AREB2Not availableUpstream-357
Matrix_138RRTF1Not availableUpstream-70
Upstream-71
Matrix_14ZCW32;AT5G62610Not availableUpstream-359
Matrix_146ORA47Not availableUpstream-71
Matrix_147ERF3;AT1G80580Not availableUpstream-71
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-69
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-72
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-358
Matrix_186FHY3Not availableUpstream-356
Matrix_190ATERF1Not availableUpstream-71
Upstream-72
Matrix_196TCP20;AT5G41030Not availableUpstream-284
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-358
Matrix_224ERF1Not availableUpstream-70
Upstream-71
Upstream-73
Upstream-74
Upstream-868
Matrix_233MYC3Not availableUpstream-359
Matrix_234RAP2.3Not availableUpstream-71
Upstream-72
Upstream-73
Matrix_243RAP2.12;RAP2.2Not availableUpstream-72
Matrix_244DREB2CNot availableUpstream-70
Matrix_247PIF3Not availableUpstream-358
Matrix_252RAP2.6Not availableUpstream-71
Matrix_260CAMTA3Not availableUpstream-279
Matrix_261ATERF-1Not availableUpstream-71
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-71
Matrix_272DEAR4Not availableUpstream-71
Matrix_277RAP2.6Not availableUpstream-70
Upstream-71
Upstream-868
Matrix_287ERF2Not availableUpstream-71
Upstream-72
Upstream-869
Matrix_288RAP2.3Not availableUpstream-70
Upstream-71
Matrix_295ERF1Not availableUpstream-71
Upstream-72
Upstream-74
Upstream-75
Upstream-869
Matrix_320MYC4Not availableUpstream-359
Upstream-1735
Matrix_321HRDNot availableUpstream-71
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-70
Upstream-71
Matrix_330MYC2;TT8Not availableUpstream-358
Matrix_332SPT;ALCNot availableUpstream-359
Matrix_334AT3G23230Not availableUpstream-72
Upstream-73
Matrix_343AT2G33710Not availableUpstream-71
Upstream-72
Upstream-869
Matrix_355ERF10;ERF11Not availableUpstream-70
Upstream-71
Matrix_360ORA59Not availableUpstream-71
Upstream-72
Upstream-74
Upstream-75
Upstream-869
Matrix_363RAP2.3Not availableUpstream-70
Upstream-71
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-359
Matrix_374AT5G07580;AT5G61590Not availableUpstream-71
Upstream-72
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-71
Matrix_378ATERF1Not availableUpstream-71
Upstream-72
Upstream-869
Matrix_389ILR3Not availableUpstream-358
Matrix_403BZR1Not availableUpstream-356
Matrix_405DREB2CNot availableUpstream-72
Matrix_406ATERF-7Not availableUpstream-69
Upstream-72
Matrix_409DEAR3Not availableUpstream-70
Matrix_426CRF1;CRF2Not availableUpstream-72
Upstream-73
Matrix_448ATERF6Not availableUpstream-73
Matrix_45DRNNot availableUpstream-71
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-70
Matrix_462ATERF-8Not availableUpstream-69
Upstream-72
Matrix_465MYC4Not availableUpstream-358
Matrix_473RRTF1Not availableUpstream-71
Upstream-72
Upstream-73
Matrix_476bHLH115;bHLH34Not availableUpstream-359
Matrix_480BES1Not availableUpstream-358
Matrix_484ATERF13Not availableUpstream-71
Upstream-72
Upstream-74
Upstream-75
Upstream-869
Matrix_49FHY3/FAR1Not availableUpstream-354
Matrix_493AT1G22985;AT1G71130Not availableUpstream-71
Matrix_5AT5G51190;ERF104Not availableUpstream-74
Matrix_50ATERF14;AT5G43410Not availableUpstream-70
Upstream-71
Upstream-73
Upstream-74
Matrix_506DRNL;ATERF-4Not availableUpstream-72
Matrix_517ERF12Not availableUpstream-71
Matrix_55PIF3Not availableUpstream-357
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-70
Matrix_60AT1G01260;AT5G57150Not availableUpstream-359
Matrix_7PIF4Not availableUpstream-360
Matrix_77PRR5Not availableUpstream-356
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-72
Upstream-73
Matrix_91CRF3Not availableUpstream-71
Motif_12CEREGLUBOX2PSLEGAcereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)Upstream-1562
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-222
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-232
Upstream-358
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-359
Upstream-1735
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-103
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-194
Upstream-358
Upstream-359
Upstream-1406
Upstream-1735
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-285
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-72
Upstream-75
Upstream-869
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-281
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-869
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-359
Upstream-1735
Motif_349QARBNEXTAQAR (quantitative activator region) in promoter region of Brassica napus extA extensin geneUpstream-194
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-359
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-69
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-382
Upstream-1375
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-217
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-700
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-382
Upstream-1375
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream1746
Downstream1745
Downstream1744