View conserved binding sites


Gene
GM03G02580
Description
No description available
Alias
Glyma03g02580;Glyma03g02580.1;PAC:26333755;Glyma03g02580.1
Binding siteNameDescriptionLocationPosition
Matrix_130TCP16Not availableUpstream-630
Upstream-631
Matrix_144AT5G08330;AT5G23280Not availableUpstream-630
Upstream-631
Upstream-632
Upstream-652
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-619
Upstream-620
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-621
Upstream-622
Matrix_196TCP20;AT5G41030Not availableUpstream-628
Upstream-629
Upstream-633
Upstream-634
Upstream-650
Matrix_216TCP16Not availableUpstream-630
Upstream-631
Matrix_232TCP23Not availableUpstream-629
Upstream-630
Upstream-632
Upstream-633
Upstream-651
Matrix_25AP3Not availableUpstream-399
Upstream-400
Matrix_26ATMYB3;MYB24Not availableUpstream-550
Upstream-551
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-630
Upstream-631
Matrix_269FHY3/FAR1Not availableUpstream-177
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-630
Upstream-631
Upstream-632
Upstream-652
Matrix_281TCP13Not availableUpstream-630
Matrix_290AP2Not availableUpstream-627
Matrix_294MEE35Not availableUpstream-630
Upstream-631
Matrix_297TCP15Not availableUpstream-629
Upstream-630
Upstream-632
Upstream-633
Upstream-651
Matrix_348AT5G51910Not availableUpstream-630
Upstream-631
Upstream-632
Upstream-652
Matrix_352LEC2Not availableUpstream-613
Upstream-614
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-621
Upstream-622
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-620
Upstream-621
Matrix_40TCP2Not availableUpstream-630
Matrix_401MYB55Not availableUpstream-624
Upstream-625
Matrix_409DEAR3Not availableUpstream-620
Upstream-621
Matrix_42AT2G45680Not availableUpstream-630
Upstream-631
Upstream-632
Upstream-652
Matrix_48PINot availableUpstream-177
Upstream-389
Upstream-390
Upstream-921
Matrix_496ATMYB15Not availableUpstream-621
Upstream-622
Matrix_507TCP3Not availableUpstream-629
Upstream-630
Upstream-632
Upstream-633
Upstream-651
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-621
Upstream-622
Matrix_79FUS3Not availableUpstream-615
Upstream-616
Matrix_82TCP17Not availableUpstream-630
Matrix_94TCP5Not availableUpstream-630
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-421
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceDownstream1122
Upstream-410
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxDownstream1059
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-698
Upstream-700
Upstream-702
Upstream-704
Upstream-706
Upstream-708
Upstream-710
Upstream-712
Upstream-714
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Downstream1022
Upstream-221
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACDownstream1153
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-552
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-621
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream1298
Motif_310ANAERO3CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curatorDownstream1049
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream1019
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream1018
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-153
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-696
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream1139
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-573
Upstream-580
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream977
Motif_419MYB4 binding site motifNot availableUpstream-552
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Downstream1228
Downstream1225
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRDownstream1261
Upstream-698
Upstream-700
Upstream-702
Upstream-704
Upstream-706
Upstream-708
Upstream-710
Upstream-712
Upstream-714
Upstream-716
Motif_470MYB98MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteinsUpstream-537
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Downstream1280
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-613
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-165
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-573
Upstream-580
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-631
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream976
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream1021
Downstream1018
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-809
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1299
Downstream1287
Downstream1151
Upstream-598
Motif_662MYB26PSMyb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragonUpstream-552
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-552
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream976
Motif_676RNFG1OSRNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of RTBV promoter; See also RNFG2OSUpstream-570
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGADownstream1260
Downstream1258
Downstream1256
Downstream1254
Upstream-698
Upstream-700
Upstream-702
Upstream-704
Upstream-706
Upstream-708
Upstream-710
Upstream-712
Upstream-714
Upstream-716
Upstream-718
Upstream-720
Upstream-722
Upstream-724
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-415
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-419
Upstream-537