View conserved binding sites


Gene
GM02G47560
Description
b binding protein of LHCII type I, chloroplastic
Alias
Glyma02g47560;Glyma02g47560.1;PAC:26290798;Glyma02g47560.1
Binding siteNameDescriptionLocationPosition
Matrix_106AT5G47390Not availableUpstream-77
Matrix_269FHY3/FAR1Not availableUpstream-156
Matrix_271AT3G16350Not availableUpstream-77
Matrix_296GBF2Not availableUpstream-164
Matrix_300bZIP68;bZIP16Not availableUpstream-164
Matrix_336AT5G08520Not availableUpstream-77
Matrix_350ARR14Not availableUpstream-77
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-1603
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-90
Motif_131P1BSPHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtiiUpstream-83
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Upstream-127
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-163
Upstream-117
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-272
Motif_384SITEIOSPCNASite I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activationUpstream-164
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-147
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-163