View conserved binding sites


Gene
GM02G47550
Description
Polyadenylate-binding protein, cytoplasmic and nuclear
Alias
Glyma02g47550;Glyma02g47550.1;PAC:26290434;Glyma02g47550.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-290
Matrix_126RBENot availableUpstream-266
Matrix_146ORA47Not availableUpstream-290
Matrix_147ERF3;AT1G80580Not availableUpstream-270
Upstream-271
Matrix_224ERF1Not availableUpstream-269
Upstream-270
Matrix_243RAP2.12;RAP2.2Not availableUpstream-269
Upstream-270
Matrix_272DEAR4Not availableUpstream-290
Matrix_287ERF2Not availableUpstream-268
Upstream-269
Matrix_295ERF1Not availableUpstream-270
Upstream-271
Matrix_301PIL5Not availableUpstream-289
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-269
Upstream-270
Matrix_334AT3G23230Not availableUpstream-269
Upstream-270
Matrix_343AT2G33710Not availableUpstream-268
Upstream-269
Matrix_344ATERF15;AT4G18450Not availableUpstream-270
Upstream-271
Matrix_356PRR5Not availableUpstream-291
Matrix_360ORA59Not availableUpstream-270
Upstream-271
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-69
Upstream-82
Matrix_374AT5G07580;AT5G61590Not availableUpstream-269
Upstream-270
Matrix_405DREB2CNot availableUpstream-267
Matrix_406ATERF-7Not availableUpstream-270
Upstream-271
Matrix_409DEAR3Not availableUpstream-289
Matrix_414AGL15Not availableUpstream-101
Upstream-102
Upstream-229
Upstream-230
Matrix_462ATERF-8Not availableUpstream-270
Upstream-271
Matrix_484ATERF13Not availableUpstream-270
Upstream-271
Matrix_50ATERF14;AT5G43410Not availableUpstream-269
Upstream-270
Matrix_77PRR5Not availableUpstream-291
Upstream-292
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Upstream-1766
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-294
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-12
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-271
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-294
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-152
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-81
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-152
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-81
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-320
Upstream-322
Upstream-324