Matrix_101 | ERF5 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_119 | RRTF1 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_138 | RRTF1 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -249 |
Matrix_22 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -247 |
Matrix_224 | ERF1 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_234 | RAP2.3 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_252 | RAP2.6 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_261 | ATERF-1 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_275 | ZAP1 | Characterization of a zinc-dependent transcriptional activator from Arabidopsis | Upstream | -174 |
| | | Upstream | -175 |
Matrix_277 | RAP2.6 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_287 | ERF2 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_288 | RAP2.3 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_295 | ERF1 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_314 | WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52 | Not available | Upstream | -242 |
Matrix_316 | WRKY15;WRKY39;WRKY7;WRKY74 | Not available | Upstream | -242 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_332 | SPT;ALC | Not available | Upstream | -250 |
Matrix_334 | AT3G23230 | Not available | Upstream | -270 |
| | | Upstream | -271 |
Matrix_343 | AT2G33710 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_35 | YAB5;YAB3 | Not available | Upstream | -273 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_360 | ORA59 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_363 | RAP2.3 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_378 | ATERF1 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_406 | ATERF-7 | Not available | Upstream | -267 |
| | | Upstream | -268 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -270 |
| | | Upstream | -271 |
Matrix_453 | EIL3 | Not available | Downstream | 3078 |
Matrix_462 | ATERF-8 | Not available | Upstream | -267 |
| | | Upstream | -268 |
Matrix_473 | RRTF1 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_484 | ATERF13 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_49 | FHY3/FAR1 | Not available | Upstream | -245 |
| | | Upstream | -246 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -268 |
| | | Upstream | -269 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -270 |
| | | Upstream | -271 |
Matrix_91 | CRF3 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Downstream | 3079 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -122 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -63 |
| | | Upstream | -65 |
| | | Upstream | -67 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -980 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Downstream | 3519 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -146 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -174 |
| | | Upstream | -243 |
| | | Upstream | -527 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -270 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -270 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -223 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 3086 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Downstream | 3516 |
| | | Upstream | -173 |
| | | Upstream | -243 |
| | | Upstream | -259 |
| | | Upstream | -1594 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -117 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -63 |
| | | Upstream | -65 |
| | | Upstream | -67 |
| | | Upstream | -69 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Upstream | -269 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -219 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -118 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -17 |
| | | Upstream | -182 |
| | | Upstream | -183 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -547 |
| | | Upstream | -784 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -17 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -62 |
| | | Upstream | -64 |
| | | Upstream | -66 |
| | | Upstream | -68 |
| | | Upstream | -70 |
| | | Upstream | -72 |
| | | Upstream | -74 |
| | | Upstream | -76 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -253 |
Motif_86 | ACGTABOX | A-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repression | Upstream | -99 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -255 |