View conserved binding sites


Gene
GM02G39870
Description
WRKY transcription factor 33
Alias
Glyma02g39870;Glyma02g39870.1;PAC:26290648;Glyma02g39870.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-269
Upstream-270
Matrix_119RRTF1Not availableUpstream-268
Upstream-269
Matrix_138RRTF1Not availableUpstream-268
Upstream-269
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-249
Matrix_22BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-247
Matrix_224ERF1Not availableUpstream-268
Upstream-269
Matrix_234RAP2.3Not availableUpstream-269
Upstream-270
Matrix_252RAP2.6Not availableUpstream-269
Upstream-270
Matrix_261ATERF-1Not availableUpstream-269
Upstream-270
Matrix_275ZAP1Characterization of a zinc-dependent transcriptional activator from ArabidopsisUpstream-174
Upstream-175
Matrix_277RAP2.6Not availableUpstream-268
Upstream-269
Matrix_287ERF2Not availableUpstream-269
Upstream-270
Matrix_288RAP2.3Not availableUpstream-268
Upstream-269
Matrix_295ERF1Not availableUpstream-269
Upstream-270
Matrix_314WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52Not availableUpstream-242
Matrix_316WRKY15;WRKY39;WRKY7;WRKY74Not availableUpstream-242
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-268
Upstream-269
Matrix_332SPT;ALCNot availableUpstream-250
Matrix_334AT3G23230Not availableUpstream-270
Upstream-271
Matrix_343AT2G33710Not availableUpstream-269
Upstream-270
Matrix_35YAB5;YAB3Not availableUpstream-273
Matrix_355ERF10;ERF11Not availableUpstream-268
Upstream-269
Matrix_360ORA59Not availableUpstream-269
Upstream-270
Matrix_363RAP2.3Not availableUpstream-268
Upstream-269
Matrix_374AT5G07580;AT5G61590Not availableUpstream-269
Upstream-270
Matrix_378ATERF1Not availableUpstream-269
Upstream-270
Matrix_406ATERF-7Not availableUpstream-267
Upstream-268
Matrix_426CRF1;CRF2Not availableUpstream-270
Upstream-271
Matrix_453EIL3Not availableDownstream3078
Matrix_462ATERF-8Not availableUpstream-267
Upstream-268
Matrix_473RRTF1Not availableUpstream-269
Upstream-270
Matrix_484ATERF13Not availableUpstream-269
Upstream-270
Matrix_49FHY3/FAR1Not availableUpstream-245
Upstream-246
Matrix_493AT1G22985;AT1G71130Not availableUpstream-269
Upstream-270
Matrix_50ATERF14;AT5G43410Not availableUpstream-268
Upstream-269
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-270
Upstream-271
Matrix_91CRF3Not availableUpstream-269
Upstream-270
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxDownstream3079
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-122
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-63
Upstream-65
Upstream-67
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-980
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesDownstream3519
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-146
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-174
Upstream-243
Upstream-527
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-270
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-270
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-223
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream3086
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisDownstream3516
Upstream-173
Upstream-243
Upstream-259
Upstream-1594
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-117
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-63
Upstream-65
Upstream-67
Upstream-69
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-269
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-219
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-118
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-17
Upstream-182
Upstream-183
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterUpstream-547
Upstream-784
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-17
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-62
Upstream-64
Upstream-66
Upstream-68
Upstream-70
Upstream-72
Upstream-74
Upstream-76
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-253
Motif_86ACGTABOXA-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repressionUpstream-99
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-255