View conserved binding sites


Gene
GM02G38870
Description
finger protein CONSTANS-LIKE 10
Alias
Glyma02g38870;Glyma02g38870.2;PAC:26290600;Glyma02g38870.2
Binding siteNameDescriptionLocationPosition
Matrix_132SOC1Not availableDownstream5083
Matrix_184AGL15Not availableUpstream-926
Matrix_196TCP20;AT5G41030Not availableUpstream-1579
Matrix_348AT5G51910Not availableUpstream-1581
Upstream-1582
Matrix_42AT2G45680Not availableUpstream-1581
Upstream-1582
Matrix_455MYB111Not availableUpstream-1929
Matrix_511AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180Not availableUpstream-1578
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexDownstream5064
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-1460
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-1678
Upstream-1682
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-1677
Upstream-1683
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-1641
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-1542
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-1586
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteDownstream5080
Upstream-1635
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-1543
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1637
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream5065
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREDownstream5163
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1594
Upstream-1595
Upstream-1687
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-1543
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-1594
Upstream-1687