Matrix_102 | WRKY21 | Not available | Upstream | -683 |
Matrix_104 | PI | Not available | Upstream | -703 |
| | | Upstream | -704 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -703 |
| | | Upstream | -704 |
Matrix_109 | GBF3 | Not available | Upstream | -703 |
| | | Upstream | -704 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Matrix_113 | ABI5 | Not available | Upstream | -703 |
| | | Upstream | -704 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -700 |
| | | Upstream | -701 |
| | | Upstream | -702 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -703 |
| | | Upstream | -704 |
Matrix_129 | ABF1 | Not available | Upstream | -704 |
| | | Upstream | -705 |
Matrix_130 | TCP16 | Not available | Upstream | -682 |
| | | Upstream | -699 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -700 |
| | | Upstream | -701 |
Matrix_156 | POC1 | Not available | Upstream | -703 |
| | | Upstream | -704 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Matrix_166 | TGA4 | Not available | Upstream | -671 |
| | | Upstream | -672 |
Matrix_17 | WRKY22 | Not available | Upstream | -683 |
Matrix_184 | AGL15 | Not available | Upstream | -358 |
Matrix_195 | GATA2;GATA4 | Not available | Upstream | -34 |
Matrix_214 | AP1 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_216 | TCP16 | Not available | Upstream | -682 |
| | | Upstream | -699 |
Matrix_232 | TCP23 | Not available | Upstream | -683 |
Matrix_233 | MYC3 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_24 | POC1 | Not available | Upstream | -700 |
| | | Upstream | -701 |
Matrix_247 | PIF3 | Not available | Upstream | -704 |
| | | Upstream | -705 |
Matrix_263 | WRKY33;WRKY19;WRKY32 | Not available | Upstream | -683 |
Matrix_264 | ATAREB1 | Not available | Upstream | -701 |
| | | Upstream | -702 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -682 |
| | | Upstream | -699 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -669 |
Matrix_290 | AP2 | Not available | Upstream | -680 |
Matrix_294 | MEE35 | Not available | Upstream | -684 |
| | | Upstream | -701 |
Matrix_296 | GBF2 | Not available | Upstream | -704 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Matrix_297 | TCP15 | Not available | Upstream | -683 |
Matrix_3 | WRKY48 | Not available | Upstream | -683 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -704 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Matrix_301 | PIL5 | Not available | Upstream | -699 |
| | | Upstream | -700 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -702 |
| | | Upstream | -703 |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -671 |
| | | Upstream | -672 |
Matrix_311 | TGA1 | Not available | Upstream | -671 |
| | | Upstream | -672 |
Matrix_331 | GBF1 | Not available | Upstream | -703 |
| | | Upstream | -704 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Matrix_332 | SPT;ALC | Not available | Upstream | -704 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Matrix_345 | POC1 | Not available | Upstream | -700 |
| | | Upstream | -701 |
| | | Upstream | -702 |
Matrix_348 | AT5G51910 | Not available | Upstream | -681 |
| | | Upstream | -682 |
Matrix_356 | PRR5 | Not available | Upstream | -697 |
| | | Upstream | -698 |
Matrix_370 | WRKY50;WRKY51 | Not available | Upstream | -683 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -403 |
Matrix_384 | ATWRKY17 | Not available | Upstream | -683 |
Matrix_399 | TGA1 | Not available | Upstream | -671 |
| | | Upstream | -672 |
Matrix_403 | BZR1 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_415 | WRKY27 | Not available | Upstream | -684 |
| | | Upstream | -701 |
Matrix_42 | AT2G45680 | Not available | Upstream | -682 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -670 |
| | | Upstream | -671 |
| | | Upstream | -702 |
| | | Upstream | -703 |
Matrix_443 | AGL15 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_456 | bZIP60 | Not available | Upstream | -670 |
| | | Upstream | -671 |
Matrix_457 | TGA2 | Not available | Upstream | -672 |
| | | Upstream | -673 |
Matrix_48 | PI | Not available | Upstream | -7 |
Matrix_488 | ABF1 | Not available | Upstream | -703 |
| | | Upstream | -704 |
Matrix_507 | TCP3 | Not available | Upstream | -683 |
| | | Upstream | -700 |
Matrix_53 | MYC3 | Not available | Upstream | -702 |
| | | Upstream | -703 |
Matrix_55 | PIF3 | Not available | Upstream | -703 |
| | | Upstream | -704 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -671 |
| | | Upstream | -672 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_64 | PIF5 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_75 | WRKY29 | Not available | Upstream | -683 |
Matrix_82 | TCP17 | Not available | Upstream | -684 |
| | | Upstream | -701 |
Matrix_94 | TCP5 | Not available | Upstream | -684 |
| | | Upstream | -701 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -735 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -706 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -706 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -238 |
| | | Upstream | -548 |
| | | Upstream | -705 |
| | | Upstream | -706 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -704 |
| | | Upstream | -706 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 17831 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -728 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -500 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -238 |
| | | Upstream | -548 |
| | | Upstream | -1472 |
Motif_329 | AMMORESIIUDCRNIA1 | Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation | Upstream | -697 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -672 |
| | | Upstream | -706 |
| | | Upstream | -734 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -501 |
Motif_383 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -21 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -533 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -671 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -163 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -671 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -705 |
| | | Upstream | -706 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -673 |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | Upstream | -727 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -705 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -711 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -673 |
Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -21 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -679 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -584 |
| | | Upstream | -586 |
| | | Upstream | -588 |
| | | Upstream | -590 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -680 |