View conserved binding sites


Gene
GM02G16260
Description
Lipopolysaccharide-responsive and beige-like anchor protein
Alias
Glyma02g16260;Glyma02g16260.1;PAC:26291135;Glyma02g16260.1
Binding siteNameDescriptionLocationPosition
Matrix_102WRKY21Not availableUpstream-683
Matrix_104PINot availableUpstream-703
Upstream-704
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-703
Upstream-704
Matrix_109GBF3Not availableUpstream-703
Upstream-704
Upstream-705
Upstream-706
Matrix_113ABI5Not availableUpstream-703
Upstream-704
Upstream-705
Upstream-706
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-700
Upstream-701
Upstream-702
Matrix_122ABF1;AREB2Not availableUpstream-703
Upstream-704
Matrix_129ABF1Not availableUpstream-704
Upstream-705
Matrix_130TCP16Not availableUpstream-682
Upstream-699
Matrix_145GBF4;AT5G44080Not availableUpstream-705
Upstream-706
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-700
Upstream-701
Matrix_156POC1Not availableUpstream-703
Upstream-704
Upstream-705
Upstream-706
Matrix_166TGA4Not availableUpstream-671
Upstream-672
Matrix_17WRKY22Not availableUpstream-683
Matrix_184AGL15Not availableUpstream-358
Matrix_195GATA2;GATA4Not availableUpstream-34
Matrix_214AP1Not availableUpstream-702
Upstream-703
Matrix_216TCP16Not availableUpstream-682
Upstream-699
Matrix_232TCP23Not availableUpstream-683
Matrix_233MYC3Not availableUpstream-705
Upstream-706
Matrix_24POC1Not availableUpstream-700
Upstream-701
Matrix_247PIF3Not availableUpstream-704
Upstream-705
Matrix_263WRKY33;WRKY19;WRKY32Not availableUpstream-683
Matrix_264ATAREB1Not availableUpstream-701
Upstream-702
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-682
Upstream-699
Matrix_278AtbZIP44Not availableUpstream-669
Matrix_290AP2Not availableUpstream-680
Matrix_294MEE35Not availableUpstream-684
Upstream-701
Matrix_296GBF2Not availableUpstream-704
Upstream-705
Upstream-706
Matrix_297TCP15Not availableUpstream-683
Matrix_3WRKY48Not availableUpstream-683
Matrix_300bZIP68;bZIP16Not availableUpstream-704
Upstream-705
Upstream-706
Matrix_301PIL5Not availableUpstream-699
Upstream-700
Upstream-705
Upstream-706
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-702
Upstream-703
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-671
Upstream-672
Matrix_311TGA1Not availableUpstream-671
Upstream-672
Matrix_331GBF1Not availableUpstream-703
Upstream-704
Upstream-705
Upstream-706
Matrix_332SPT;ALCNot availableUpstream-704
Upstream-705
Upstream-706
Matrix_345POC1Not availableUpstream-700
Upstream-701
Upstream-702
Matrix_348AT5G51910Not availableUpstream-681
Upstream-682
Matrix_356PRR5Not availableUpstream-697
Upstream-698
Matrix_370WRKY50;WRKY51Not availableUpstream-683
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-403
Matrix_384ATWRKY17Not availableUpstream-683
Matrix_399TGA1Not availableUpstream-671
Upstream-672
Matrix_403BZR1Not availableUpstream-702
Upstream-703
Matrix_415WRKY27Not availableUpstream-684
Upstream-701
Matrix_42AT2G45680Not availableUpstream-682
Matrix_438AtbZIP63Not availableUpstream-670
Upstream-671
Upstream-702
Upstream-703
Matrix_443AGL15Not availableUpstream-702
Upstream-703
Matrix_456bZIP60Not availableUpstream-670
Upstream-671
Matrix_457TGA2Not availableUpstream-672
Upstream-673
Matrix_48PINot availableUpstream-7
Matrix_488ABF1Not availableUpstream-703
Upstream-704
Matrix_507TCP3Not availableUpstream-683
Upstream-700
Matrix_53MYC3Not availableUpstream-702
Upstream-703
Matrix_55PIF3Not availableUpstream-703
Upstream-704
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-671
Upstream-672
Matrix_60AT1G01260;AT5G57150Not availableUpstream-705
Upstream-706
Matrix_64PIF5Not availableUpstream-705
Upstream-706
Matrix_65POC1;PIL1Not availableUpstream-705
Upstream-706
Matrix_75WRKY29Not availableUpstream-683
Matrix_82TCP17Not availableUpstream-684
Upstream-701
Matrix_94TCP5Not availableUpstream-684
Upstream-701
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-735
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-706
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-706
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-238
Upstream-548
Upstream-705
Upstream-706
Motif_244ABRE-like binding site motifNot availableUpstream-704
Upstream-706
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream17831
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-728
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-500
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-238
Upstream-548
Upstream-1472
Motif_329AMMORESIIUDCRNIA1Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activationUpstream-697
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-672
Upstream-706
Upstream-734
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-501
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-21
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-533
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-671
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-163
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-671
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-705
Upstream-706
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-673
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneUpstream-727
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-705
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-711
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-673
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-21
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-679
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-584
Upstream-586
Upstream-588
Upstream-590
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-680