View conserved binding sites


Gene
GM02G11580
Description
Polyadenylate-binding protein, cytoplasmic and nuclear
Alias
Glyma02g11580;Glyma02g11580.1;PAC:26287438;Glyma02g11580.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-274
Upstream-275
Upstream-276
Upstream-277
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_106AT5G47390Not availableUpstream-263
Matrix_110ATABI4;AT3G57600Not availableUpstream-292
Upstream-293
Upstream-294
Upstream-295
Matrix_119RRTF1Not availableUpstream-293
Upstream-294
Matrix_126RBENot availableUpstream-272
Matrix_138RRTF1Not availableUpstream-293
Upstream-294
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-445
Matrix_144AT5G08330;AT5G23280Not availableUpstream-474
Upstream-475
Upstream-476
Matrix_146ORA47Not availableUpstream-294
Upstream-295
Matrix_147ERF3;AT1G80580Not availableUpstream-276
Upstream-277
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_151ASIL1Not availableUpstream-278
Upstream-279
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-278
Upstream-279
Upstream-280
Upstream-281
Upstream-295
Upstream-296
Matrix_169E2F1Not availableUpstream-295
Matrix_171LBD3;LBD4Not availableUpstream-257
Upstream-258
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-465
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-297
Upstream-298
Matrix_186FHY3Not availableUpstream-296
Upstream-297
Matrix_190ATERF1Not availableUpstream-274
Upstream-275
Upstream-276
Upstream-277
Upstream-278
Upstream-294
Upstream-295
Upstream-296
Matrix_196TCP20;AT5G41030Not availableUpstream-472
Upstream-473
Matrix_203GATA9;GATA12Not availableUpstream-444
Matrix_216TCP16Not availableUpstream-474
Upstream-475
Matrix_224ERF1Not availableUpstream-275
Upstream-276
Upstream-278
Upstream-279
Upstream-293
Upstream-294
Matrix_232TCP23Not availableUpstream-473
Upstream-474
Matrix_234RAP2.3Not availableUpstream-277
Upstream-278
Upstream-294
Upstream-295
Matrix_243RAP2.12;RAP2.2Not availableUpstream-259
Upstream-260
Upstream-275
Upstream-276
Upstream-278
Upstream-279
Upstream-280
Upstream-281
Upstream-295
Upstream-296
Matrix_246ARR10Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulatorsUpstream-442
Matrix_252RAP2.6Not availableUpstream-274
Upstream-275
Upstream-277
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_261ATERF-1Not availableUpstream-258
Upstream-259
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-474
Upstream-475
Matrix_271AT3G16350Not availableUpstream-263
Matrix_272DEAR4Not availableUpstream-277
Upstream-278
Upstream-294
Upstream-295
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-474
Matrix_287ERF2Not availableUpstream-274
Upstream-275
Upstream-277
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_288RAP2.3Not availableUpstream-293
Upstream-294
Matrix_295ERF1Not availableUpstream-276
Upstream-277
Upstream-294
Upstream-295
Matrix_297TCP15Not availableUpstream-473
Upstream-474
Matrix_313ATMYB65;MYB33Not availableUpstream-451
Matrix_321HRDNot availableUpstream-275
Upstream-276
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-257
Upstream-258
Upstream-275
Upstream-276
Upstream-278
Upstream-279
Upstream-293
Upstream-294
Matrix_334AT3G23230Not availableUpstream-275
Upstream-276
Upstream-278
Upstream-279
Upstream-280
Upstream-281
Upstream-295
Upstream-296
Matrix_336AT5G08520Not availableUpstream-264
Matrix_343AT2G33710Not availableUpstream-274
Upstream-275
Upstream-277
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_344ATERF15;AT4G18450Not availableUpstream-276
Upstream-277
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_348AT5G51910Not availableUpstream-474
Upstream-475
Matrix_355ERF10;ERF11Not availableUpstream-278
Upstream-279
Upstream-293
Upstream-294
Matrix_360ORA59Not availableUpstream-276
Upstream-277
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_363RAP2.3Not availableUpstream-293
Upstream-294
Matrix_374AT5G07580;AT5G61590Not availableUpstream-275
Upstream-276
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-258
Upstream-259
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_378ATERF1Not availableUpstream-277
Upstream-278
Upstream-294
Upstream-295
Matrix_380ATMYR1Not availableUpstream-254
Upstream-255
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-278
Upstream-279
Upstream-280
Matrix_396AP3Not availableUpstream-421
Matrix_405DREB2CNot availableUpstream-273
Upstream-274
Upstream-276
Upstream-277
Matrix_406ATERF-7Not availableUpstream-276
Upstream-277
Upstream-278
Upstream-279
Upstream-280
Upstream-292
Upstream-293
Matrix_409DEAR3Not availableUpstream-257
Upstream-258
Upstream-278
Upstream-279
Upstream-293
Upstream-294
Matrix_414AGL15Not availableUpstream-107
Upstream-235
Matrix_416ASL5Not availableUpstream-255
Matrix_42AT2G45680Not availableUpstream-474
Upstream-475
Matrix_426CRF1;CRF2Not availableUpstream-259
Upstream-260
Upstream-278
Upstream-279
Upstream-280
Upstream-281
Upstream-295
Upstream-296
Matrix_433ATERF1Not availableUpstream-278
Upstream-279
Matrix_438AtbZIP63Not availableUpstream-290
Matrix_448ATERF6Not availableUpstream-278
Upstream-279
Upstream-293
Upstream-294
Matrix_45DRNNot availableUpstream-276
Upstream-277
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_451STY1Not availableUpstream-480
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-278
Upstream-279
Upstream-293
Upstream-294
Matrix_462ATERF-8Not availableUpstream-276
Upstream-277
Upstream-278
Upstream-279
Upstream-280
Upstream-292
Upstream-293
Matrix_473RRTF1Not availableUpstream-277
Upstream-278
Upstream-294
Upstream-295
Matrix_475AT5G64220Not availableUpstream-296
Upstream-297
Matrix_48PINot availableUpstream-462
Matrix_484ATERF13Not availableUpstream-276
Upstream-277
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_488ABF1Not availableUpstream-254
Matrix_49FHY3/FAR1Not availableUpstream-295
Matrix_490AtMYB77;ATMYB44Not availableUpstream-453
Matrix_493AT1G22985;AT1G71130Not availableUpstream-258
Upstream-259
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_5AT5G51190;ERF104Not availableUpstream-276
Upstream-277
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_50ATERF14;AT5G43410Not availableUpstream-275
Upstream-276
Upstream-278
Upstream-279
Upstream-293
Upstream-294
Matrix_506DRNL;ATERF-4Not availableUpstream-259
Upstream-260
Upstream-278
Upstream-279
Upstream-280
Upstream-281
Upstream-295
Upstream-296
Matrix_507TCP3Not availableUpstream-473
Upstream-474
Matrix_517ERF12Not availableUpstream-276
Upstream-277
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_53MYC3Not availableUpstream-296
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-257
Upstream-258
Upstream-278
Upstream-279
Upstream-293
Upstream-294
Matrix_59AT4G00238;AT4G00250Not availableUpstream-278
Upstream-279
Matrix_77PRR5Not availableUpstream-296
Upstream-297
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-259
Upstream-260
Upstream-278
Upstream-279
Upstream-280
Upstream-281
Upstream-295
Upstream-296
Matrix_87AT1G19000Not availableUpstream-262
Upstream-263
Matrix_91CRF3Not availableUpstream-258
Upstream-259
Upstream-278
Upstream-279
Upstream-280
Upstream-294
Upstream-295
Matrix_93YAB5Not availableUpstream-1525
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-371
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-140
Upstream-661
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-455
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-264
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-299
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-455
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-422
Motif_288NONAMERMOTIFTAH3H4Nonamer motif found in promoter of wheat histone genes H3 and H4Upstream-456
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-277
Upstream-295
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyUpstream-123
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-258
Upstream-299
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-665
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-455
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-138
Upstream-664
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-422
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-451
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1577
Upstream-1578
Upstream-1579
Upstream-1580
Upstream-1581
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-288
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-246
Upstream-439
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-50
Upstream-74
Upstream-75
Upstream-597
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-50
Upstream-74
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-323
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-427
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-372