View conserved binding sites


Gene
GM02G03530
Description
No description available
Alias
Glyma02g03530;Glyma02g03530.1;PAC:26290458;Glyma02g03530.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-403
Upstream-404
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-403
Upstream-404
Matrix_109GBF3Not availableUpstream-403
Upstream-404
Upstream-405
Upstream-406
Matrix_113ABI5Not availableUpstream-403
Upstream-404
Upstream-405
Upstream-406
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-401
Upstream-402
Matrix_120BEE2Not availableUpstream-404
Matrix_122ABF1;AREB2Not availableUpstream-403
Upstream-404
Matrix_129ABF1Not availableUpstream-404
Upstream-405
Matrix_134ABF1Not availableUpstream-404
Matrix_14ZCW32;AT5G62610Not availableUpstream-404
Upstream-405
Upstream-1135
Matrix_145GBF4;AT5G44080Not availableUpstream-405
Upstream-406
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-400
Upstream-401
Matrix_151ASIL1Not availableUpstream-372
Matrix_156POC1Not availableUpstream-403
Upstream-404
Upstream-405
Upstream-406
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-404
Matrix_160RVE1Not availableDownstream1773
Matrix_161MYBC1;AT3G10760;LUX;AT5G05090;AT5G59570Not availableUpstream-438
Matrix_173ZAP1Not availableUpstream-460
Matrix_192FHY3/FAR1Not availableUpstream-401
Matrix_194HYH;HY5Not availableUpstream-401
Upstream-402
Matrix_197NAPNot availableUpstream-464
Upstream-465
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-404
Matrix_214AP1Not availableUpstream-402
Upstream-403
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-401
Upstream-402
Upstream-405
Upstream-406
Matrix_220WRKY18Not availableUpstream-463
Upstream-464
Matrix_233MYC3Not availableUpstream-405
Upstream-406
Matrix_235WRKY67;WRKY64;WRKY63;WRKY66Not availableUpstream-464
Matrix_24POC1Not availableUpstream-400
Matrix_247PIF3Not availableUpstream-404
Upstream-405
Matrix_259AT1G50680;AT1G51120Not availableUpstream-404
Matrix_260CAMTA3Not availableUpstream-458
Matrix_264ATAREB1Not availableUpstream-401
Upstream-402
Upstream-404
Upstream-405
Matrix_275ZAP1Characterization of a zinc-dependent transcriptional activator from ArabidopsisUpstream-462
Matrix_285DDF1Not availableUpstream-454
Matrix_296GBF2Not availableUpstream-404
Upstream-405
Upstream-406
Matrix_300bZIP68;bZIP16Not availableUpstream-404
Upstream-405
Upstream-406
Matrix_301PIL5Not availableUpstream-399
Upstream-400
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-402
Upstream-403
Matrix_331GBF1Not availableUpstream-403
Upstream-404
Upstream-405
Upstream-406
Matrix_332SPT;ALCNot availableUpstream-404
Upstream-405
Upstream-406
Upstream-1135
Matrix_338AP2Not availableUpstream-401
Upstream-402
Matrix_345POC1Not availableUpstream-401
Upstream-402
Matrix_356PRR5Not availableUpstream-401
Matrix_370WRKY50;WRKY51Not availableUpstream-463
Matrix_389ILR3Not availableUpstream-404
Matrix_403BZR1Not availableUpstream-402
Upstream-403
Matrix_414AGL15Not availableUpstream-48
Matrix_443AGL15Not availableUpstream-402
Upstream-403
Matrix_470WRKY18Not availableUpstream-463
Matrix_488ABF1Not availableUpstream-396
Upstream-397
Upstream-403
Upstream-404
Matrix_504WRKY40Not availableUpstream-464
Matrix_55PIF3Not availableUpstream-403
Upstream-404
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-457
Matrix_60AT1G01260;AT5G57150Not availableUpstream-405
Upstream-406
Matrix_64PIF5Not availableUpstream-405
Upstream-406
Matrix_65POC1;PIL1Not availableUpstream-405
Upstream-406
Matrix_7PIF4Not availableUpstream-404
Upstream-405
Matrix_77PRR5Not availableUpstream-402
Matrix_80BIM1Not availableUpstream-403
Matrix_87AT1G19000Not availableUpstream-880
Upstream-881
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceDownstream1654
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-71
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisDownstream1764
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Downstream1759
Upstream-132
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-735
Upstream-880
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-881
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-406
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-735
Upstream-879
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneUpstream-436
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-102
Upstream-406
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-404
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-882
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-405
Upstream-406
Motif_244ABRE-like binding site motifNot availableUpstream-404
Upstream-406
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-173
Upstream-915
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityUpstream-35
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-465
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream1716
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-404
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-170
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-42
Upstream-93
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-461
Motif_323MYB1LEPRTomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))Upstream-176
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-406
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationDownstream1688
Upstream-172
Upstream-917
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-437
Motif_408EVENINGATEvening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clockDownstream1772
Motif_419MYB4 binding site motifNot availableUpstream-915
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-104
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-405
Upstream-406
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-405
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-824
Upstream-828
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Downstream1655
Motif_525CRTDREHVCBF2Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperatureUpstream-457
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-404
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-457
Motif_599LREBOXIIPCCHS1;HY5BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-404
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-404
Motif_638ABRE binding site motifNot availableUpstream-404
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-403
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1674
Downstream1665
Upstream-30
Upstream-31
Upstream-43
Upstream-430
Upstream-928
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-915
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream1674
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-839