View conserved binding sites


Gene
GM02G03140
Description
component response regulator ARR3
Alias
Glyma02g03140;Glyma02g03140.1;PAC:26288651;Glyma02g03140.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-684
Matrix_102WRKY21Not availableUpstream-655
Upstream-656
Matrix_116ANAC55Not availableDownstream1325
Matrix_119RRTF1Not availableUpstream-685
Matrix_120BEE2Not availableUpstream-925
Matrix_130TCP16Not availableUpstream-656
Matrix_138RRTF1Not availableUpstream-685
Matrix_14ZCW32;AT5G62610Not availableUpstream-925
Matrix_141AT3G25990Not availableUpstream-657
Upstream-661
Matrix_146ORA47Not availableUpstream-684
Matrix_147ERF3;AT1G80580Not availableUpstream-686
Upstream-687
Matrix_148WRKY60Not availableUpstream-654
Upstream-655
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-685
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-925
Matrix_169E2F1Not availableUpstream-683
Matrix_17WRKY22Not availableUpstream-655
Upstream-656
Matrix_171LBD3;LBD4Not availableUpstream-636
Matrix_186FHY3Not availableUpstream-925
Matrix_197NAPNot availableUpstream-655
Matrix_202WRKY71;WRKY28;WRKY8Not availableUpstream-655
Upstream-656
Matrix_207WRKY10;WRKY57;AT2G44745;ATWRKY13;WRKY49Not availableUpstream-655
Upstream-656
Matrix_220WRKY18Not availableUpstream-655
Upstream-656
Matrix_23ANAC46Not availableDownstream1325
Matrix_234RAP2.3Not availableUpstream-684
Matrix_235WRKY67;WRKY64;WRKY63;WRKY66Not availableUpstream-656
Upstream-657
Matrix_249WRKY11Not availableUpstream-654
Upstream-655
Matrix_25AP3Not availableUpstream-452
Matrix_252RAP2.6Not availableUpstream-684
Matrix_261ATERF-1Not availableUpstream-685
Matrix_263WRKY33;WRKY19;WRKY32Not availableUpstream-655
Upstream-656
Matrix_264ATAREB1Not availableUpstream-925
Matrix_27ATAIB;ATNIG1Not availableUpstream-927
Matrix_272DEAR4Not availableUpstream-684
Matrix_287ERF2Not availableUpstream-684
Matrix_288RAP2.3Not availableUpstream-685
Matrix_3WRKY48Not availableUpstream-655
Upstream-656
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-635
Matrix_314WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52Not availableUpstream-654
Upstream-655
Upstream-1345
Matrix_316WRKY15;WRKY39;WRKY7;WRKY74Not availableUpstream-654
Upstream-655
Upstream-1345
Matrix_320MYC4Not availableUpstream-926
Matrix_323BIM3Not availableUpstream-925
Matrix_325WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2Not availableUpstream-656
Upstream-657
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-685
Matrix_330MYC2;TT8Not availableUpstream-925
Matrix_334AT3G23230Not availableUpstream-685
Matrix_343AT2G33710Not availableUpstream-684
Matrix_35YAB5;YAB3Not availableUpstream-683
Matrix_355ERF10;ERF11Not availableUpstream-685
Matrix_357WRKY61;WRKY6;WRKY9;WRKY36;WRKY47;WRKY42;WRKY31;WRKY72Not availableUpstream-654
Upstream-655
Matrix_363RAP2.3Not availableUpstream-685
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-926
Matrix_366ARR14Not availableDownstream1815
Matrix_369AT2G18300Not availableUpstream-925
Matrix_370WRKY50;WRKY51Not availableUpstream-655
Upstream-656
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-39
Upstream-47
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-685
Matrix_378ATERF1Not availableUpstream-684
Matrix_384ATWRKY17Not availableUpstream-655
Upstream-656
Matrix_407AP1Not availableUpstream-154
Matrix_41anac058Not availableDownstream1324
Matrix_415WRKY27Not availableUpstream-655
Upstream-656
Matrix_420ANAC58Not availableDownstream1325
Matrix_434ARR11Not availableDownstream1815
Matrix_437MYC2Not availableUpstream-926
Matrix_44CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2Not availableDownstream1324
Matrix_45DRNNot availableUpstream-686
Upstream-687
Matrix_458MGP;AT1G14580;AtIDD7;AtIDD5;AtIDD4;AtIDD12;JKD;AT5G66730Not availableDownstream1321
Matrix_465MYC4Not availableUpstream-925
Matrix_466PRR5Not availableUpstream-656
Matrix_469NAC041;NAC083Not availableDownstream1324
Matrix_473RRTF1Not availableUpstream-684
Matrix_476bHLH115;bHLH34Not availableUpstream-926
Upstream-927
Matrix_493AT1G22985;AT1G71130Not availableUpstream-685
Matrix_500WRKY43Not availableUpstream-654
Upstream-655
Matrix_506DRNL;ATERF-4Not availableUpstream-685
Matrix_53MYC3Not availableUpstream-927
Matrix_58WRKY55;ATWRKY54;WRKY46;WRKY70;AtWRKY41;WRKY53;WRKY30Not availableUpstream-653
Matrix_60AT1G01260;AT5G57150Not availableUpstream-926
Upstream-927
Matrix_75WRKY29Not availableUpstream-655
Upstream-656
Matrix_77PRR5Not availableUpstream-924
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-685
Matrix_91CRF3Not availableUpstream-685
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-928
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-639
Upstream-661
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-927
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream1329
Downstream1319
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-927
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-926
Upstream-927
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream1329
Downstream1319
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-924
Upstream-926
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-603
Upstream-657
Upstream-665
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-184
Motif_29GATA-1Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-496
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-683
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream1373
Upstream-200
Upstream-207
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream1329
Downstream1319
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-927
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream1372
Upstream-199
Upstream-206
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-707
Motif_404AACACOREOSGLUB1Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoterDownstream1381
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream1378
Motif_419MYB4 binding site motifNot availableDownstream1381
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-925
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-504
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1381
Downstream1377
Downstream1338
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-205
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1314
Downstream1287
Upstream-531
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1381
Downstream1377
Downstream1338
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream1287
Upstream-531