Matrix_101 | ERF5 | Not available | Upstream | -684 |
Matrix_102 | WRKY21 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_116 | ANAC55 | Not available | Downstream | 1325 |
Matrix_119 | RRTF1 | Not available | Upstream | -685 |
Matrix_120 | BEE2 | Not available | Upstream | -925 |
Matrix_130 | TCP16 | Not available | Upstream | -656 |
Matrix_138 | RRTF1 | Not available | Upstream | -685 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -925 |
Matrix_141 | AT3G25990 | Not available | Upstream | -657 |
| | | Upstream | -661 |
Matrix_146 | ORA47 | Not available | Upstream | -684 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -686 |
| | | Upstream | -687 |
Matrix_148 | WRKY60 | Not available | Upstream | -654 |
| | | Upstream | -655 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -685 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -925 |
Matrix_169 | E2F1 | Not available | Upstream | -683 |
Matrix_17 | WRKY22 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -636 |
Matrix_186 | FHY3 | Not available | Upstream | -925 |
Matrix_197 | NAP | Not available | Upstream | -655 |
Matrix_202 | WRKY71;WRKY28;WRKY8 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_207 | WRKY10;WRKY57;AT2G44745;ATWRKY13;WRKY49 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_220 | WRKY18 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_23 | ANAC46 | Not available | Downstream | 1325 |
Matrix_234 | RAP2.3 | Not available | Upstream | -684 |
Matrix_235 | WRKY67;WRKY64;WRKY63;WRKY66 | Not available | Upstream | -656 |
| | | Upstream | -657 |
Matrix_249 | WRKY11 | Not available | Upstream | -654 |
| | | Upstream | -655 |
Matrix_25 | AP3 | Not available | Upstream | -452 |
Matrix_252 | RAP2.6 | Not available | Upstream | -684 |
Matrix_261 | ATERF-1 | Not available | Upstream | -685 |
Matrix_263 | WRKY33;WRKY19;WRKY32 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_264 | ATAREB1 | Not available | Upstream | -925 |
Matrix_27 | ATAIB;ATNIG1 | Not available | Upstream | -927 |
Matrix_272 | DEAR4 | Not available | Upstream | -684 |
Matrix_287 | ERF2 | Not available | Upstream | -684 |
Matrix_288 | RAP2.3 | Not available | Upstream | -685 |
Matrix_3 | WRKY48 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -635 |
Matrix_314 | WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52 | Not available | Upstream | -654 |
| | | Upstream | -655 |
| | | Upstream | -1345 |
Matrix_316 | WRKY15;WRKY39;WRKY7;WRKY74 | Not available | Upstream | -654 |
| | | Upstream | -655 |
| | | Upstream | -1345 |
Matrix_320 | MYC4 | Not available | Upstream | -926 |
Matrix_323 | BIM3 | Not available | Upstream | -925 |
Matrix_325 | WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2 | Not available | Upstream | -656 |
| | | Upstream | -657 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -685 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -925 |
Matrix_334 | AT3G23230 | Not available | Upstream | -685 |
Matrix_343 | AT2G33710 | Not available | Upstream | -684 |
Matrix_35 | YAB5;YAB3 | Not available | Upstream | -683 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -685 |
Matrix_357 | WRKY61;WRKY6;WRKY9;WRKY36;WRKY47;WRKY42;WRKY31;WRKY72 | Not available | Upstream | -654 |
| | | Upstream | -655 |
Matrix_363 | RAP2.3 | Not available | Upstream | -685 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -926 |
Matrix_366 | ARR14 | Not available | Downstream | 1815 |
Matrix_369 | AT2G18300 | Not available | Upstream | -925 |
Matrix_370 | WRKY50;WRKY51 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -39 |
| | | Upstream | -47 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -685 |
Matrix_378 | ATERF1 | Not available | Upstream | -684 |
Matrix_384 | ATWRKY17 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_407 | AP1 | Not available | Upstream | -154 |
Matrix_41 | anac058 | Not available | Downstream | 1324 |
Matrix_415 | WRKY27 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_420 | ANAC58 | Not available | Downstream | 1325 |
Matrix_434 | ARR11 | Not available | Downstream | 1815 |
Matrix_437 | MYC2 | Not available | Upstream | -926 |
Matrix_44 | CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2 | Not available | Downstream | 1324 |
Matrix_45 | DRN | Not available | Upstream | -686 |
| | | Upstream | -687 |
Matrix_458 | MGP;AT1G14580;AtIDD7;AtIDD5;AtIDD4;AtIDD12;JKD;AT5G66730 | Not available | Downstream | 1321 |
Matrix_465 | MYC4 | Not available | Upstream | -925 |
Matrix_466 | PRR5 | Not available | Upstream | -656 |
Matrix_469 | NAC041;NAC083 | Not available | Downstream | 1324 |
Matrix_473 | RRTF1 | Not available | Upstream | -684 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -926 |
| | | Upstream | -927 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -685 |
Matrix_500 | WRKY43 | Not available | Upstream | -654 |
| | | Upstream | -655 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -685 |
Matrix_53 | MYC3 | Not available | Upstream | -927 |
Matrix_58 | WRKY55;ATWRKY54;WRKY46;WRKY70;AtWRKY41;WRKY53;WRKY30 | Not available | Upstream | -653 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -926 |
| | | Upstream | -927 |
Matrix_75 | WRKY29 | Not available | Upstream | -655 |
| | | Upstream | -656 |
Matrix_77 | PRR5 | Not available | Upstream | -924 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -685 |
Matrix_91 | CRF3 | Not available | Upstream | -685 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -928 |
Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | Upstream | -639 |
| | | Upstream | -661 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -927 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Downstream | 1329 |
| | | Downstream | 1319 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -927 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -926 |
| | | Upstream | -927 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 1329 |
| | | Downstream | 1319 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -924 |
| | | Upstream | -926 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -603 |
| | | Upstream | -657 |
| | | Upstream | -665 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -184 |
Motif_29 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -496 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -683 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 1373 |
| | | Upstream | -200 |
| | | Upstream | -207 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Downstream | 1329 |
| | | Downstream | 1319 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -927 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 1372 |
| | | Upstream | -199 |
| | | Upstream | -206 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -707 |
Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Downstream | 1381 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Downstream | 1378 |
Motif_419 | MYB4 binding site motif | Not available | Downstream | 1381 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -925 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -504 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 1381 |
| | | Downstream | 1377 |
| | | Downstream | 1338 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -205 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 1314 |
| | | Downstream | 1287 |
| | | Upstream | -531 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 1381 |
| | | Downstream | 1377 |
| | | Downstream | 1338 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 1287 |
| | | Upstream | -531 |