View conserved binding sites


Gene
GM02G01880
Description
galacturonosyltransferase-like
Alias
Glyma02g01880;Glyma02g01880.1;PAC:26289318;Glyma02g01880.1
Binding siteNameDescriptionLocationPosition
Matrix_110ATABI4;AT3G57600Not availableUpstream-245
Matrix_146ORA47Not availableUpstream-243
Matrix_206CUC1;ANAC100Not availableUpstream-179
Matrix_243RAP2.12;RAP2.2Not availableUpstream-13
Matrix_25AP3Not availableUpstream-256
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-181
Matrix_269FHY3/FAR1Not availableUpstream-260
Upstream-45
Matrix_272DEAR4Not availableUpstream-243
Matrix_298RAV1Not availableUpstream-61
Matrix_317AT1G06070;AT2G31370;AT2G40620Not availableUpstream-537
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-13
Matrix_36RAV1_1RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-61
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusDownstream1512
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-243
Matrix_409DEAR3Not availableUpstream-244
Matrix_413RAV1Not availableUpstream-61
Matrix_414AGL15Not availableUpstream-204
Upstream-100
Matrix_426CRF1;CRF2Not availableUpstream-13
Matrix_463HAT3.1Not availableUpstream-242
Matrix_48PINot availableUpstream-198
Upstream-94
Matrix_488ABF1Not availableUpstream-196
Matrix_489RAV1Not availableUpstream-61
Matrix_493AT1G22985;AT1G71130Not availableUpstream-13
Matrix_506DRNL;ATERF-4Not availableUpstream-13
Matrix_518AT2G21230Not availableUpstream-537
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-179
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-13
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-13
Matrix_91CRF3Not availableUpstream-13
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-123
Upstream-72
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-350
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Downstream1258
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-534
Upstream-156
Downstream1265
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-58
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream1271
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream1173
Motif_28POLLEN2LELAT52One of two co-dependent regulatory elements responsible for pollen specific activation of tomato lat52 gene; Found at -60 to -52 region; See POLLEN1LELAT52; AGAAA and TCCACCATA are required for pollen specific expressionUpstream-347
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream1174
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-190
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-43
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-238
Upstream-237
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-341
Upstream-306
Upstream-53
Downstream1101
Downstream1165
Downstream1176
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-306
Downstream1165
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-90
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-123