Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -245 |
Matrix_146 | ORA47 | Not available | Upstream | -243 |
Matrix_206 | CUC1;ANAC100 | Not available | Upstream | -179 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -13 |
Matrix_25 | AP3 | Not available | Upstream | -256 |
Matrix_268 | EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105 | Not available | Upstream | -181 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -260 |
| | | Upstream | -45 |
Matrix_272 | DEAR4 | Not available | Upstream | -243 |
Matrix_298 | RAV1 | Not available | Upstream | -61 |
Matrix_317 | AT1G06070;AT2G31370;AT2G40620 | Not available | Upstream | -537 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -13 |
Matrix_36 | RAV1_1 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -61 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Downstream | 1512 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -243 |
Matrix_409 | DEAR3 | Not available | Upstream | -244 |
Matrix_413 | RAV1 | Not available | Upstream | -61 |
Matrix_414 | AGL15 | Not available | Upstream | -204 |
| | | Upstream | -100 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -13 |
Matrix_463 | HAT3.1 | Not available | Upstream | -242 |
Matrix_48 | PI | Not available | Upstream | -198 |
| | | Upstream | -94 |
Matrix_488 | ABF1 | Not available | Upstream | -196 |
Matrix_489 | RAV1 | Not available | Upstream | -61 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -13 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -13 |
Matrix_518 | AT2G21230 | Not available | Upstream | -537 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -179 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -13 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -13 |
Matrix_91 | CRF3 | Not available | Upstream | -13 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -123 |
| | | Upstream | -72 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -350 |
Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | Downstream | 1258 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -534 |
| | | Upstream | -156 |
| | | Downstream | 1265 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -58 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 1271 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 1173 |
Motif_28 | POLLEN2LELAT52 | One of two co-dependent regulatory elements responsible for pollen specific activation of tomato lat52 gene; Found at -60 to -52 region; See POLLEN1LELAT52; AGAAA and TCCACCATA are required for pollen specific expression | Upstream | -347 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 1174 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -190 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -43 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -238 |
| | | Upstream | -237 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -341 |
| | | Upstream | -306 |
| | | Upstream | -53 |
| | | Downstream | 1101 |
| | | Downstream | 1165 |
| | | Downstream | 1176 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -306 |
| | | Downstream | 1165 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -90 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -123 |