Matrix_101 | ERF5 | Not available | Upstream | -219 |
Matrix_104 | PI | Not available | Upstream | -251 |
Matrix_113 | ABI5 | Not available | Upstream | -251 |
| | | Upstream | -317 |
Matrix_119 | RRTF1 | Not available | Upstream | -218 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -251 |
| | | Upstream | -315 |
| | | Upstream | -316 |
Matrix_129 | ABF1 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_134 | ABF1 | Not available | Upstream | -252 |
| | | Upstream | -253 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -252 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -248 |
| | | Upstream | -312 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Downstream | 2375 |
Matrix_156 | POC1 | Not available | Upstream | -314 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Downstream | 2406 |
Matrix_190 | ATERF1 | Not available | Upstream | -220 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -249 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -249 |
Matrix_214 | AP1 | Not available | Upstream | -250 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -253 |
Matrix_224 | ERF1 | Not available | Upstream | -218 |
Matrix_234 | RAP2.3 | Not available | Upstream | -219 |
Matrix_24 | POC1 | Not available | Upstream | -248 |
| | | Upstream | -312 |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -251 |
Matrix_252 | RAP2.6 | Not available | Upstream | -219 |
Matrix_261 | ATERF-1 | Not available | Upstream | -219 |
Matrix_264 | ATAREB1 | Not available | Upstream | -249 |
| | | Upstream | -313 |
Matrix_27 | ATAIB;ATNIG1 | Not available | Upstream | -316 |
Matrix_277 | RAP2.6 | Not available | Upstream | -218 |
Matrix_287 | ERF2 | Not available | Upstream | -219 |
Matrix_288 | RAP2.3 | Not available | Upstream | -218 |
Matrix_295 | ERF1 | Not available | Upstream | -219 |
Matrix_296 | GBF2 | Not available | Upstream | -251 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -251 |
Matrix_301 | PIL5 | Not available | Upstream | -247 |
| | | Upstream | -317 |
Matrix_320 | MYC4 | Not available | Upstream | -316 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -218 |
Matrix_331 | GBF1 | Not available | Upstream | -173 |
| | | Upstream | -251 |
Matrix_334 | AT3G23230 | Not available | Upstream | -220 |
Matrix_338 | AP2 | Not available | Upstream | -249 |
Matrix_343 | AT2G33710 | Not available | Upstream | -219 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -218 |
Matrix_356 | PRR5 | Not available | Upstream | -249 |
| | | Upstream | -309 |
| | | Upstream | -313 |
Matrix_360 | ORA59 | Not available | Upstream | -219 |
| | | Upstream | -220 |
Matrix_362 | DEAR3 | Not available | Downstream | 2377 |
Matrix_363 | RAP2.3 | Not available | Upstream | -218 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -316 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -219 |
Matrix_378 | ATERF1 | Not available | Upstream | -219 |
Matrix_387 | ORA47 | Not available | Downstream | 2375 |
Matrix_389 | ILR3 | Not available | Upstream | -316 |
Matrix_403 | BZR1 | Not available | Upstream | -250 |
| | | Upstream | -314 |
Matrix_405 | DREB2C | Not available | Upstream | -220 |
Matrix_406 | ATERF-7 | Not available | Upstream | -217 |
| | | Upstream | -218 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -220 |
Matrix_443 | AGL15 | Not available | Upstream | -250 |
Matrix_472 | ZN_C2_H2 | Not available | Upstream | -220 |
Matrix_473 | RRTF1 | Not available | Upstream | -219 |
Matrix_480 | BES1 | Not available | Upstream | -316 |
Matrix_484 | ATERF13 | Not available | Upstream | -219 |
Matrix_488 | ABF1 | Not available | Upstream | -244 |
| | | Upstream | -251 |
| | | Upstream | -308 |
Matrix_497 | AP3 | Not available | Downstream | 2322 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -218 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -220 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Downstream | 2406 |
| | | Downstream | 2376 |
Matrix_53 | MYC3 | Not available | Upstream | -313 |
Matrix_55 | PIF3 | Not available | Upstream | -251 |
| | | Upstream | -315 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -252 |
Matrix_64 | PIF5 | Not available | Upstream | -316 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -253 |
Matrix_7 | PIF4 | Not available | Upstream | -251 |
| | | Upstream | -252 |
| | | Upstream | -315 |
| | | Upstream | -316 |
Matrix_77 | PRR5 | Not available | Upstream | -250 |
| | | Upstream | -314 |
Matrix_80 | BIM1 | Not available | Upstream | -251 |
| | | Upstream | -314 |
| | | Upstream | -315 |
| | | Upstream | -317 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -220 |
Matrix_91 | CRF3 | Not available | Upstream | -219 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Downstream | 2332 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Downstream | 2319 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -23 |
| | | Upstream | -316 |
| | | Upstream | -318 |
| | | Upstream | -487 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -253 |
| | | Upstream | -317 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Downstream | 2404 |
| | | Upstream | -405 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -253 |
| | | Upstream | -317 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -252 |
| | | Upstream | -253 |
| | | Upstream | -291 |
| | | Upstream | -292 |
| | | Upstream | -316 |
| | | Upstream | -495 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 2376 |
| | | Upstream | -145 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -262 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -251 |
| | | Upstream | -253 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -252 |
| | | Upstream | -375 |
| | | Upstream | -476 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -16 |
Motif_262 | WRKY70 | Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana | Upstream | -578 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -1973 |
| | | Upstream | -1979 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -220 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -271 |
| | | Upstream | -292 |
| | | Upstream | -495 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -220 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Downstream | 2368 |
| | | Upstream | -253 |
| | | Upstream | -317 |
| | | Upstream | -486 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -305 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Downstream | 2374 |
| | | Upstream | -451 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -405 |
| | | Upstream | -416 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -405 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Downstream | 2351 |
| | | Downstream | 2325 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -253 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Downstream | 2374 |
| | | Upstream | -451 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -289 |
Motif_498 | SGBFGMGMAUX28 | bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter | Upstream | -251 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -314 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -1975 |
| | | Upstream | -1976 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Downstream | 2374 |
| | | Upstream | -451 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -251 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Downstream | 2374 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -230 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -405 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -251 |