View conserved binding sites


Gene
GM02G01210
Description
linked kinase-associated serine/threonine phosphatase 2C
Alias
Glyma02g01210;Glyma02g01210.1;PAC:26288362;Glyma02g01210.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-219
Matrix_104PINot availableUpstream-251
Matrix_113ABI5Not availableUpstream-251
Upstream-317
Matrix_119RRTF1Not availableUpstream-218
Matrix_122ABF1;AREB2Not availableUpstream-251
Upstream-315
Upstream-316
Matrix_129ABF1Not availableUpstream-251
Upstream-252
Matrix_134ABF1Not availableUpstream-252
Upstream-253
Matrix_145GBF4;AT5G44080Not availableUpstream-252
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-248
Upstream-312
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableDownstream2375
Matrix_156POC1Not availableUpstream-314
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableDownstream2406
Matrix_190ATERF1Not availableUpstream-220
Matrix_192FHY3/FAR1Not availableUpstream-249
Matrix_194HYH;HY5Not availableUpstream-249
Matrix_214AP1Not availableUpstream-250
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-253
Matrix_224ERF1Not availableUpstream-218
Matrix_234RAP2.3Not availableUpstream-219
Matrix_24POC1Not availableUpstream-248
Upstream-312
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-251
Matrix_252RAP2.6Not availableUpstream-219
Matrix_261ATERF-1Not availableUpstream-219
Matrix_264ATAREB1Not availableUpstream-249
Upstream-313
Matrix_27ATAIB;ATNIG1Not availableUpstream-316
Matrix_277RAP2.6Not availableUpstream-218
Matrix_287ERF2Not availableUpstream-219
Matrix_288RAP2.3Not availableUpstream-218
Matrix_295ERF1Not availableUpstream-219
Matrix_296GBF2Not availableUpstream-251
Matrix_300bZIP68;bZIP16Not availableUpstream-251
Matrix_301PIL5Not availableUpstream-247
Upstream-317
Matrix_320MYC4Not availableUpstream-316
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-218
Matrix_331GBF1Not availableUpstream-173
Upstream-251
Matrix_334AT3G23230Not availableUpstream-220
Matrix_338AP2Not availableUpstream-249
Matrix_343AT2G33710Not availableUpstream-219
Matrix_355ERF10;ERF11Not availableUpstream-218
Matrix_356PRR5Not availableUpstream-249
Upstream-309
Upstream-313
Matrix_360ORA59Not availableUpstream-219
Upstream-220
Matrix_362DEAR3Not availableDownstream2377
Matrix_363RAP2.3Not availableUpstream-218
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-316
Matrix_374AT5G07580;AT5G61590Not availableUpstream-219
Matrix_378ATERF1Not availableUpstream-219
Matrix_387ORA47Not availableDownstream2375
Matrix_389ILR3Not availableUpstream-316
Matrix_403BZR1Not availableUpstream-250
Upstream-314
Matrix_405DREB2CNot availableUpstream-220
Matrix_406ATERF-7Not availableUpstream-217
Upstream-218
Matrix_426CRF1;CRF2Not availableUpstream-220
Matrix_443AGL15Not availableUpstream-250
Matrix_472ZN_C2_H2Not availableUpstream-220
Matrix_473RRTF1Not availableUpstream-219
Matrix_480BES1Not availableUpstream-316
Matrix_484ATERF13Not availableUpstream-219
Matrix_488ABF1Not availableUpstream-244
Upstream-251
Upstream-308
Matrix_497AP3Not availableDownstream2322
Matrix_50ATERF14;AT5G43410Not availableUpstream-218
Matrix_506DRNL;ATERF-4Not availableUpstream-220
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaDownstream2406
Downstream2376
Matrix_53MYC3Not availableUpstream-313
Matrix_55PIF3Not availableUpstream-251
Upstream-315
Matrix_60AT1G01260;AT5G57150Not availableUpstream-252
Matrix_64PIF5Not availableUpstream-316
Matrix_65POC1;PIL1Not availableUpstream-253
Matrix_7PIF4Not availableUpstream-251
Upstream-252
Upstream-315
Upstream-316
Matrix_77PRR5Not availableUpstream-250
Upstream-314
Matrix_80BIM1Not availableUpstream-251
Upstream-314
Upstream-315
Upstream-317
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-220
Matrix_91CRF3Not availableUpstream-219
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxDownstream2332
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Downstream2319
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-23
Upstream-316
Upstream-318
Upstream-487
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-253
Upstream-317
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroDownstream2404
Upstream-405
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-253
Upstream-317
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-252
Upstream-253
Upstream-291
Upstream-292
Upstream-316
Upstream-495
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream2376
Upstream-145
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-262
Motif_244ABRE-like binding site motifNot availableUpstream-251
Upstream-253
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-252
Upstream-375
Upstream-476
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-16
Motif_262WRKY70Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thalianaUpstream-578
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-1973
Upstream-1979
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-220
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-271
Upstream-292
Upstream-495
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-220
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream2368
Upstream-253
Upstream-317
Upstream-486
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-305
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesDownstream2374
Upstream-451
Motif_419MYB4 binding site motifNot availableUpstream-405
Upstream-416
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-405
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Downstream2351
Downstream2325
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-253
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Downstream2374
Upstream-451
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-289
Motif_498SGBFGMGMAUX28bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoterUpstream-251
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-314
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-1975
Upstream-1976
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Downstream2374
Upstream-451
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-251
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABADownstream2374
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-230
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-405
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-251