View conserved binding sites


Gene
GM01G43650
Description
Hexokinase-1
Alias
Glyma01g43650;Glyma01g43650.1;PAC:26323785;Glyma01g43650.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-65
Upstream-66
Upstream-218
Upstream-219
Upstream-221
Upstream-222
Matrix_138RRTF1Not availableUpstream-66
Upstream-67
Matrix_146ORA47Not availableUpstream-65
Upstream-66
Upstream-218
Upstream-219
Matrix_147ERF3;AT1G80580Not availableUpstream-67
Upstream-68
Upstream-162
Upstream-163
Matrix_151ASIL1Not availableUpstream-161
Upstream-162
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-216
Upstream-217
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-163
Upstream-164
Upstream-219
Upstream-220
Matrix_174ZAT2Not availableUpstream-222
Upstream-223
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-32
Matrix_190ATERF1Not availableUpstream-218
Upstream-219
Upstream-220
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-174
Matrix_224ERF1Not availableUpstream-66
Upstream-67
Upstream-220
Upstream-221
Matrix_234RAP2.3Not availableUpstream-65
Upstream-66
Upstream-218
Upstream-219
Matrix_25AP3Not availableUpstream-196
Matrix_252RAP2.6Not availableUpstream-65
Upstream-66
Upstream-221
Upstream-222
Matrix_255cdf3Not availableUpstream-184
Upstream-185
Matrix_261ATERF-1Not availableUpstream-66
Upstream-67
Upstream-218
Upstream-219
Upstream-221
Upstream-222
Matrix_272DEAR4Not availableUpstream-65
Upstream-66
Upstream-218
Upstream-219
Matrix_277RAP2.6Not availableUpstream-220
Matrix_287ERF2Not availableUpstream-65
Upstream-66
Upstream-218
Upstream-219
Upstream-221
Upstream-222
Matrix_288RAP2.3Not availableUpstream-66
Upstream-67
Matrix_295ERF1Not availableUpstream-67
Upstream-68
Upstream-221
Upstream-222
Matrix_321HRDNot availableUpstream-221
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-66
Upstream-67
Upstream-217
Upstream-218
Upstream-220
Upstream-221
Matrix_334AT3G23230Not availableUpstream-66
Upstream-67
Upstream-219
Upstream-220
Upstream-222
Upstream-223
Matrix_343AT2G33710Not availableUpstream-65
Upstream-66
Upstream-218
Upstream-219
Upstream-221
Upstream-222
Matrix_344ATERF15;AT4G18450Not availableUpstream-67
Upstream-68
Upstream-162
Upstream-163
Matrix_355ERF10;ERF11Not availableUpstream-66
Upstream-67
Upstream-217
Upstream-218
Upstream-220
Upstream-221
Matrix_360ORA59Not availableUpstream-67
Upstream-68
Upstream-221
Upstream-222
Matrix_363RAP2.3Not availableUpstream-66
Upstream-67
Upstream-220
Upstream-221
Matrix_374AT5G07580;AT5G61590Not availableUpstream-66
Upstream-67
Upstream-217
Upstream-218
Upstream-221
Upstream-222
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-66
Upstream-67
Upstream-218
Upstream-219
Matrix_378ATERF1Not availableUpstream-65
Upstream-66
Upstream-221
Upstream-222
Matrix_39AP1Not availableUpstream-196
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-217
Upstream-218
Matrix_401MYB55Not availableUpstream-221
Matrix_406ATERF-7Not availableUpstream-67
Upstream-68
Upstream-160
Upstream-161
Upstream-216
Upstream-217
Upstream-219
Upstream-220
Matrix_409DEAR3Not availableUpstream-66
Upstream-67
Upstream-217
Upstream-218
Matrix_414AGL15Not availableUpstream-199
Matrix_426CRF1;CRF2Not availableUpstream-66
Upstream-67
Upstream-219
Upstream-220
Upstream-222
Upstream-223
Matrix_433ATERF1Not availableUpstream-161
Upstream-162
Matrix_448ATERF6Not availableUpstream-161
Upstream-162
Matrix_45DRNNot availableUpstream-67
Upstream-68
Upstream-162
Upstream-163
Upstream-221
Upstream-222
Matrix_450SPL7Not availableUpstream-118
Upstream-120
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-217
Matrix_462ATERF-8Not availableUpstream-67
Upstream-68
Upstream-160
Upstream-161
Upstream-216
Upstream-217
Matrix_473RRTF1Not availableUpstream-65
Upstream-66
Matrix_48PINot availableUpstream-198
Upstream-209
Matrix_482AT2G25650;AT4G00270Not availableUpstream-223
Matrix_484ATERF13Not availableUpstream-67
Upstream-68
Upstream-162
Upstream-163
Upstream-221
Upstream-222
Matrix_493AT1G22985;AT1G71130Not availableUpstream-66
Upstream-67
Upstream-218
Upstream-219
Upstream-221
Upstream-222
Matrix_5AT5G51190;ERF104Not availableUpstream-67
Upstream-68
Upstream-162
Upstream-163
Matrix_50ATERF14;AT5G43410Not availableUpstream-66
Upstream-67
Upstream-217
Upstream-218
Upstream-220
Upstream-221
Matrix_506DRNL;ATERF-4Not availableUpstream-66
Upstream-67
Upstream-219
Upstream-220
Upstream-222
Upstream-223
Matrix_517ERF12Not availableUpstream-67
Upstream-68
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-66
Upstream-67
Upstream-220
Upstream-221
Matrix_78AT3G45610Not availableUpstream-120
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-66
Upstream-67
Upstream-219
Upstream-220
Upstream-222
Upstream-223
Matrix_91CRF3Not availableUpstream-66
Upstream-67
Upstream-218
Upstream-219
Upstream-221
Upstream-222
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-398
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-158
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-176
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-369
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroDownstream4602
Upstream-329
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-14
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream4517
Downstream4496
Downstream4477
Motif_207MAMMALENHANCore sequence in enhancers from polyoma virus and from the IgM heavy chain geneUpstream-238
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-324
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-340
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-61
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream4614
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-348
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-26
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-68
Upstream-222
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-222
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-175
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisDownstream4599
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-411
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream4494
Downstream4479
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-12
Upstream-60
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-218
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-6
Motif_419MYB4 binding site motifNot availableUpstream-61
Motif_489SORLREP3ATone of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataDownstream4513
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Downstream4496
Downstream4478
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Downstream4559
Upstream-158
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-409
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream5286
Downstream5285
Downstream5284
Downstream5283
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-59
Upstream-239
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneDownstream4582
Downstream4494
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-183
Upstream-304
Upstream-374
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-60
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterDownstream4581
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-208