Matrix_104 | PI | Not available | Upstream | -724 |
| | | Upstream | -774 |
| | | Upstream | -828 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -382 |
| | | Upstream | -828 |
| | | Upstream | -892 |
| | | Upstream | -893 |
Matrix_109 | GBF3 | Not available | Upstream | -773 |
| | | Upstream | -774 |
| | | Upstream | -828 |
| | | Upstream | -830 |
Matrix_111 | ABF3 | Not available | Upstream | -725 |
| | | Upstream | -726 |
Matrix_113 | ABI5 | Not available | Upstream | -723 |
| | | Upstream | -724 |
| | | Upstream | -726 |
| | | Upstream | -773 |
| | | Upstream | -774 |
| | | Upstream | -828 |
| | | Upstream | -830 |
Matrix_115 | AGL15 | Not available | Upstream | -137 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -772 |
| | | Upstream | -825 |
| | | Upstream | -826 |
Matrix_120 | BEE2 | Not available | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -829 |
| | | Upstream | -893 |
| | | Upstream | -894 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -723 |
| | | Upstream | -724 |
| | | Upstream | -725 |
| | | Upstream | -773 |
| | | Upstream | -774 |
| | | Upstream | -828 |
| | | Upstream | -829 |
Matrix_129 | ABF1 | Not available | Upstream | -724 |
| | | Upstream | -725 |
| | | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -829 |
Matrix_134 | ABF1 | Not available | Upstream | -724 |
| | | Upstream | -725 |
| | | Upstream | -726 |
| | | Upstream | -775 |
| | | Upstream | -776 |
| | | Upstream | -829 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -829 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -775 |
| | | Upstream | -776 |
| | | Upstream | -830 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -721 |
| | | Upstream | -771 |
| | | Upstream | -825 |
Matrix_153 | AP2 | Not available | Upstream | -382 |
| | | Upstream | -892 |
| | | Upstream | -893 |
Matrix_156 | POC1 | Not available | Upstream | -776 |
| | | Upstream | -828 |
| | | Upstream | -830 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -829 |
| | | Upstream | -893 |
| | | Upstream | -894 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -721 |
| | | Upstream | -722 |
| | | Upstream | -726 |
| | | Upstream | -771 |
| | | Upstream | -772 |
| | | Upstream | -826 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -722 |
| | | Upstream | -772 |
| | | Upstream | -826 |
Matrix_196 | TCP20;AT5G41030 | Not available | Downstream | 2748 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -829 |
Matrix_214 | AP1 | Not available | Upstream | -723 |
| | | Upstream | -827 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -721 |
| | | Upstream | -722 |
| | | Upstream | -771 |
| | | Upstream | -772 |
| | | Upstream | -826 |
Matrix_233 | MYC3 | Not available | Upstream | -830 |
Matrix_24 | POC1 | Not available | Upstream | -721 |
| | | Upstream | -771 |
| | | Upstream | -825 |
Matrix_247 | PIF3 | Not available | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -829 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -829 |
Matrix_264 | ATAREB1 | Not available | Upstream | -722 |
| | | Upstream | -725 |
| | | Upstream | -771 |
| | | Upstream | -772 |
| | | Upstream | -826 |
| | | Upstream | -829 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -131 |
| | | Upstream | -134 |
| | | Upstream | -137 |
Matrix_27 | ATAIB;ATNIG1 | Not available | Upstream | -894 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Downstream | 2745 |
Matrix_296 | GBF2 | Not available | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -829 |
| | | Upstream | -830 |
Matrix_297 | TCP15 | Not available | Downstream | 2747 |
| | | Downstream | 2744 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -829 |
| | | Upstream | -830 |
Matrix_301 | PIL5 | Not available | Upstream | -719 |
| | | Upstream | -720 |
| | | Upstream | -726 |
| | | Upstream | -769 |
| | | Upstream | -770 |
| | | Upstream | -824 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -827 |
Matrix_320 | MYC4 | Not available | Upstream | -894 |
Matrix_323 | BIM3 | Not available | Upstream | -893 |
| | | Upstream | -894 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -893 |
| | | Upstream | -894 |
Matrix_331 | GBF1 | Not available | Upstream | -773 |
| | | Upstream | -774 |
| | | Upstream | -828 |
| | | Upstream | -830 |
Matrix_332 | SPT;ALC | Not available | Upstream | -775 |
| | | Upstream | -776 |
| | | Upstream | -829 |
| | | Upstream | -830 |
| | | Upstream | -893 |
| | | Upstream | -894 |
Matrix_338 | AP2 | Not available | Upstream | -722 |
| | | Upstream | -772 |
| | | Upstream | -826 |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -406 |
Matrix_345 | POC1 | Not available | Upstream | -772 |
| | | Upstream | -825 |
| | | Upstream | -826 |
Matrix_348 | AT5G51910 | Not available | Downstream | 2746 |
Matrix_356 | PRR5 | Not available | Upstream | -718 |
| | | Upstream | -722 |
| | | Upstream | -772 |
| | | Upstream | -822 |
| | | Upstream | -826 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -894 |
| | | Upstream | -895 |
Matrix_369 | AT2G18300 | Not available | Upstream | -891 |
| | | Upstream | -892 |
Matrix_389 | ILR3 | Not available | Upstream | -724 |
| | | Upstream | -725 |
| | | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -829 |
Matrix_403 | BZR1 | Not available | Upstream | -723 |
| | | Upstream | -773 |
| | | Upstream | -827 |
Matrix_415 | WRKY27 | Not available | Upstream | -409 |
Matrix_443 | AGL15 | Not available | Upstream | -723 |
| | | Upstream | -773 |
| | | Upstream | -827 |
Matrix_449 | BIM2 | Not available | Upstream | -893 |
| | | Upstream | -894 |
Matrix_465 | MYC4 | Not available | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -893 |
| | | Upstream | -894 |
Matrix_467 | RAV1 | Not available | Upstream | -406 |
| | | Upstream | -407 |
Matrix_477 | RAV1 | Not available | Upstream | -406 |
| | | Upstream | -407 |
Matrix_48 | PI | Not available | Upstream | -360 |
| | | Upstream | -923 |
Matrix_480 | BES1 | Not available | Upstream | -723 |
| | | Upstream | -724 |
| | | Upstream | -725 |
| | | Upstream | -773 |
| | | Upstream | -774 |
| | | Upstream | -775 |
Matrix_488 | ABF1 | Not available | Upstream | -717 |
| | | Upstream | -774 |
| | | Upstream | -828 |
Matrix_53 | MYC3 | Not available | Upstream | -827 |
| | | Upstream | -891 |
| | | Upstream | -892 |
Matrix_55 | PIF3 | Not available | Upstream | -382 |
| | | Upstream | -774 |
| | | Upstream | -828 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -775 |
Matrix_64 | PIF5 | Not available | Upstream | -830 |
| | | Upstream | -894 |
| | | Upstream | -895 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -776 |
Matrix_7 | PIF4 | Not available | Upstream | -724 |
| | | Upstream | -725 |
| | | Upstream | -726 |
| | | Upstream | -727 |
| | | Upstream | -774 |
| | | Upstream | -775 |
| | | Upstream | -776 |
| | | Upstream | -777 |
| | | Upstream | -829 |
Matrix_72 | CDF2 | Not available | Upstream | -916 |
Matrix_77 | PRR5 | Not available | Upstream | -724 |
| | | Upstream | -773 |
| | | Upstream | -827 |
| | | Upstream | -828 |
Matrix_80 | BIM1 | Not available | Upstream | -773 |
| | | Upstream | -774 |
| | | Upstream | -828 |
| | | Upstream | -892 |
| | | Upstream | -893 |
Matrix_97 | APRR2 | Not available | Intron | 392 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -934 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -1885 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -894 |
| | | Upstream | -896 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -384 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -726 |
| | | Upstream | -776 |
| | | Upstream | -830 |
| | | Upstream | -895 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Downstream | 2736 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 2725 |
| | | Upstream | -384 |
| | | Upstream | -726 |
| | | Upstream | -776 |
| | | Upstream | -895 |
Motif_197 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | Upstream | -774 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -828 |
Motif_213 | ZML2 | The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis | Downstream | 2673 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -107 |
| | | Upstream | -725 |
| | | Upstream | -726 |
| | | Upstream | -775 |
| | | Upstream | -776 |
| | | Upstream | -829 |
| | | Upstream | -830 |
| | | Upstream | -894 |
| | | Upstream | -1328 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -816 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -724 |
| | | Upstream | -726 |
| | | Upstream | -774 |
| | | Upstream | -828 |
| | | Upstream | -830 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -725 |
| | | Upstream | -726 |
| | | Upstream | -775 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Downstream | 2678 |
| | | Downstream | 2656 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 2603 |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | Upstream | -821 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -882 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -828 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Downstream | 2691 |
| | | Downstream | 2686 |
| | | Downstream | 2681 |
| | | Upstream | -821 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 2661 |
| | | Upstream | -849 |
| | | Upstream | -899 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -173 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -1889 |
Motif_332 | SV40COREENHAN | SV40 core enhancer; Similar sequences found in rbcS genes | Upstream | -759 |
| | | Upstream | -833 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -726 |
| | | Upstream | -776 |
| | | Upstream | -895 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -1888 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -156 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Downstream | 2679 |
Motif_395 | RHE_element | Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns | Upstream | -896 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -384 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -776 |
| | | Upstream | -829 |
| | | Upstream | -830 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -942 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -869 |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | Upstream | -858 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -829 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -893 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -864 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Downstream | 2657 |
Motif_517 | LEAFYATAG | Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis | Upstream | -765 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -118 |
| | | Upstream | -121 |
| | | Upstream | -124 |
| | | Upstream | -127 |
| | | Upstream | -130 |
| | | Upstream | -133 |
| | | Upstream | -136 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -828 |
Motif_564 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | Downstream | 2692 |
| | | Downstream | 2687 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -888 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -869 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Downstream | 2621 |
Motif_606 | NAPINMOTIFBN | Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds | Downstream | 2928 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -434 |
| | | Upstream | -437 |
| | | Upstream | -494 |
| | | Upstream | -564 |
| | | Upstream | -1172 |
| | | Upstream | -1338 |
| | | Upstream | -1527 |
| | | Upstream | -1815 |
| | | Upstream | -1816 |
| | | Upstream | -1817 |
| | | Upstream | -1818 |
| | | Upstream | -1887 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -724 |
| | | Upstream | -727 |
| | | Upstream | -774 |
| | | Upstream | -828 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Downstream | 2936 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -411 |
| | | Upstream | -859 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -828 |
Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | Upstream | -947 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -299 |
| | | Upstream | -850 |
| | | Upstream | -920 |
| | | Upstream | -921 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -920 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -724 |
| | | Upstream | -727 |
| | | Upstream | -774 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Downstream | 2689 |
| | | Downstream | 2684 |