Matrix_101 | ERF5 | Not available | Upstream | -109 |
| | | Upstream | -110 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -107 |
| | | Upstream | -108 |
| | | Upstream | -110 |
| | | Upstream | -111 |
Matrix_119 | RRTF1 | Not available | Upstream | -108 |
Matrix_138 | RRTF1 | Not available | Upstream | -108 |
Matrix_146 | ORA47 | Not available | Upstream | -109 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -109 |
| | | Upstream | -110 |
Matrix_152 | EIL1;AT5G65100 | Not available | Upstream | -136 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -107 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -110 |
| | | Upstream | -111 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -233 |
| | | Upstream | -234 |
Matrix_186 | FHY3 | Not available | Upstream | -233 |
| | | Upstream | -234 |
Matrix_190 | ATERF1 | Not available | Upstream | -107 |
| | | Upstream | -108 |
| | | Upstream | -110 |
| | | Upstream | -111 |
| | | Upstream | -113 |
| | | Upstream | -114 |
Matrix_224 | ERF1 | Not available | Upstream | -108 |
| | | Upstream | -111 |
Matrix_234 | RAP2.3 | Not available | Upstream | -109 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -110 |
| | | Upstream | -111 |
Matrix_244 | DREB2C | Not available | Upstream | -108 |
Matrix_25 | AP3 | Not available | Upstream | -563 |
Matrix_252 | RAP2.6 | Not available | Upstream | -109 |
| | | Upstream | -112 |
Matrix_261 | ATERF-1 | Not available | Upstream | -109 |
| | | Upstream | -110 |
Matrix_272 | DEAR4 | Not available | Upstream | -109 |
Matrix_277 | RAP2.6 | Not available | Upstream | -108 |
Matrix_287 | ERF2 | Not available | Upstream | -109 |
| | | Upstream | -110 |
Matrix_288 | RAP2.3 | Not available | Upstream | -108 |
| | | Upstream | -109 |
Matrix_295 | ERF1 | Not available | Upstream | -109 |
Matrix_321 | HRD | Not available | Upstream | -109 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -108 |
| | | Upstream | -109 |
Matrix_334 | AT3G23230 | Not available | Upstream | -110 |
| | | Upstream | -111 |
Matrix_343 | AT2G33710 | Not available | Upstream | -109 |
| | | Upstream | -110 |
| | | Upstream | -112 |
| | | Upstream | -113 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -108 |
| | | Upstream | -109 |
Matrix_360 | ORA59 | Not available | Upstream | -109 |
Matrix_363 | RAP2.3 | Not available | Upstream | -108 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -202 |
| | | Upstream | -551 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -109 |
| | | Upstream | -110 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -109 |
| | | Upstream | -112 |
Matrix_378 | ATERF1 | Not available | Upstream | -109 |
| | | Upstream | -110 |
| | | Upstream | -112 |
| | | Upstream | -113 |
Matrix_385 | DEAR4 | Not available | Upstream | -108 |
Matrix_394 | DREB_U | Not available | Upstream | -108 |
Matrix_405 | DREB2C | Not available | Upstream | -113 |
| | | Upstream | -114 |
Matrix_406 | ATERF-7 | Not available | Upstream | -107 |
| | | Upstream | -108 |
Matrix_409 | DEAR3 | Not available | Upstream | -108 |
| | | Upstream | -111 |
Matrix_414 | AGL15 | Not available | Upstream | -26 |
| | | Upstream | -220 |
| | | Upstream | -221 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -110 |
Matrix_45 | DRN | Not available | Upstream | -109 |
| | | Upstream | -110 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -108 |
| | | Upstream | -111 |
Matrix_462 | ATERF-8 | Not available | Upstream | -107 |
| | | Upstream | -108 |
Matrix_473 | RRTF1 | Not available | Upstream | -109 |
| | | Upstream | -110 |
| | | Upstream | -112 |
| | | Upstream | -113 |
Matrix_484 | ATERF13 | Not available | Upstream | -109 |
| | | Upstream | -110 |
Matrix_49 | FHY3/FAR1 | Not available | Upstream | -100 |
| | | Upstream | -231 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -109 |
| | | Upstream | -110 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -108 |
| | | Upstream | -109 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -110 |
| | | Upstream | -111 |
Matrix_517 | ERF12 | Not available | Upstream | -109 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -108 |
| | | Upstream | -109 |
| | | Upstream | -111 |
| | | Upstream | -112 |
Matrix_77 | PRR5 | Not available | Upstream | -232 |
| | | Upstream | -233 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -110 |
| | | Upstream | -111 |
Matrix_91 | CRF3 | Not available | Upstream | -109 |
| | | Upstream | -110 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Downstream | 2652 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -153 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -105 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -235 |
| | | Upstream | -1514 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -262 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 2641 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -110 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -236 |
| | | Upstream | -1515 |
Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | Upstream | -127 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -664 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -105 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -130 |
Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | Downstream | 2651 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Downstream | 2629 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Downstream | 2639 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -182 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -132 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -182 |