View conserved binding sites


Gene
GM01G42160
Description
No description available
Alias
Glyma01g42160;Glyma01g42160.1;PAC:26325865;Glyma01g42160.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-109
Upstream-110
Matrix_110ATABI4;AT3G57600Not availableUpstream-107
Upstream-108
Upstream-110
Upstream-111
Matrix_119RRTF1Not availableUpstream-108
Matrix_138RRTF1Not availableUpstream-108
Matrix_146ORA47Not availableUpstream-109
Matrix_147ERF3;AT1G80580Not availableUpstream-109
Upstream-110
Matrix_152EIL1;AT5G65100Not availableUpstream-136
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-107
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-110
Upstream-111
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-233
Upstream-234
Matrix_186FHY3Not availableUpstream-233
Upstream-234
Matrix_190ATERF1Not availableUpstream-107
Upstream-108
Upstream-110
Upstream-111
Upstream-113
Upstream-114
Matrix_224ERF1Not availableUpstream-108
Upstream-111
Matrix_234RAP2.3Not availableUpstream-109
Matrix_243RAP2.12;RAP2.2Not availableUpstream-110
Upstream-111
Matrix_244DREB2CNot availableUpstream-108
Matrix_25AP3Not availableUpstream-563
Matrix_252RAP2.6Not availableUpstream-109
Upstream-112
Matrix_261ATERF-1Not availableUpstream-109
Upstream-110
Matrix_272DEAR4Not availableUpstream-109
Matrix_277RAP2.6Not availableUpstream-108
Matrix_287ERF2Not availableUpstream-109
Upstream-110
Matrix_288RAP2.3Not availableUpstream-108
Upstream-109
Matrix_295ERF1Not availableUpstream-109
Matrix_321HRDNot availableUpstream-109
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-108
Upstream-109
Matrix_334AT3G23230Not availableUpstream-110
Upstream-111
Matrix_343AT2G33710Not availableUpstream-109
Upstream-110
Upstream-112
Upstream-113
Matrix_355ERF10;ERF11Not availableUpstream-108
Upstream-109
Matrix_360ORA59Not availableUpstream-109
Matrix_363RAP2.3Not availableUpstream-108
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-202
Upstream-551
Matrix_374AT5G07580;AT5G61590Not availableUpstream-109
Upstream-110
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-109
Upstream-112
Matrix_378ATERF1Not availableUpstream-109
Upstream-110
Upstream-112
Upstream-113
Matrix_385DEAR4Not availableUpstream-108
Matrix_394DREB_UNot availableUpstream-108
Matrix_405DREB2CNot availableUpstream-113
Upstream-114
Matrix_406ATERF-7Not availableUpstream-107
Upstream-108
Matrix_409DEAR3Not availableUpstream-108
Upstream-111
Matrix_414AGL15Not availableUpstream-26
Upstream-220
Upstream-221
Matrix_426CRF1;CRF2Not availableUpstream-110
Matrix_45DRNNot availableUpstream-109
Upstream-110
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-108
Upstream-111
Matrix_462ATERF-8Not availableUpstream-107
Upstream-108
Matrix_473RRTF1Not availableUpstream-109
Upstream-110
Upstream-112
Upstream-113
Matrix_484ATERF13Not availableUpstream-109
Upstream-110
Matrix_49FHY3/FAR1Not availableUpstream-100
Upstream-231
Matrix_493AT1G22985;AT1G71130Not availableUpstream-109
Upstream-110
Matrix_50ATERF14;AT5G43410Not availableUpstream-108
Upstream-109
Matrix_506DRNL;ATERF-4Not availableUpstream-110
Upstream-111
Matrix_517ERF12Not availableUpstream-109
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-108
Upstream-109
Upstream-111
Upstream-112
Matrix_77PRR5Not availableUpstream-232
Upstream-233
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-110
Upstream-111
Matrix_91CRF3Not availableUpstream-109
Upstream-110
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFDownstream2652
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-153
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-105
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-235
Upstream-1514
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-262
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream2641
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-110
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-236
Upstream-1515
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-127
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-664
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-105
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-130
Motif_562-300CORETGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factorsDownstream2651
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteDownstream2629
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneDownstream2639
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-182
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-132
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-182