Matrix_101 | ERF5 | Not available | Upstream | -2 |
Matrix_119 | RRTF1 | Not available | Upstream | -13 |
| | | Upstream | -16 |
Matrix_138 | RRTF1 | Not available | Upstream | -13 |
| | | Upstream | -16 |
| | | Upstream | -121 |
| | | Upstream | -122 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -2 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -3 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -314 |
Matrix_224 | ERF1 | Not available | Upstream | -4 |
Matrix_234 | RAP2.3 | Not available | Upstream | -2 |
Matrix_252 | RAP2.6 | Not available | Upstream | -2 |
| | | Upstream | -122 |
| | | Upstream | -123 |
Matrix_26 | ATMYB3;MYB24 | Not available | Upstream | -33 |
Matrix_261 | ATERF-1 | Not available | Upstream | -2 |
Matrix_268 | EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105 | Not available | Upstream | -122 |
Matrix_287 | ERF2 | Not available | Upstream | -2 |
Matrix_288 | RAP2.3 | Not available | Upstream | -121 |
Matrix_295 | ERF1 | Not available | Upstream | -5 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -314 |
Matrix_333 | GATA3 | Not available | Upstream | -57 |
| | | Upstream | -58 |
Matrix_334 | AT3G23230 | Not available | Upstream | -3 |
Matrix_343 | AT2G33710 | Not available | Upstream | -2 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -314 |
Matrix_360 | ORA59 | Not available | Upstream | -5 |
Matrix_363 | RAP2.3 | Not available | Upstream | -16 |
| | | Upstream | -121 |
| | | Upstream | -122 |
Matrix_378 | ATERF1 | Not available | Upstream | -2 |
| | | Upstream | -17 |
| | | Upstream | -122 |
| | | Upstream | -123 |
Matrix_39 | AP1 | Not available | Intron | 3064 |
Matrix_396 | AP3 | Not available | Upstream | -144 |
Matrix_406 | ATERF-7 | Not available | Upstream | -3 |
Matrix_45 | DRN | Not available | Upstream | -2 |
Matrix_473 | RRTF1 | Not available | Upstream | -2 |
| | | Upstream | -17 |
| | | Upstream | -122 |
| | | Upstream | -123 |
Matrix_484 | ATERF13 | Not available | Upstream | -5 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -2 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -3 |
| | | Upstream | -314 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -314 |
Matrix_81 | YAB1 | Not available | Intron | 8481 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -3 |
Matrix_91 | CRF3 | Not available | Upstream | -2 |
Motif_12 | CEREGLUBOX2PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | Intron | 3020 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -92 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -92 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Intron | 3048 |
| | | Upstream | -74 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -144 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -155 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Downstream | 9501 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -144 |
Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | Upstream | -415 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -120 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 9499 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -74 |
Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | Intron | 3076 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -156 |
Motif_640 | RYREPEATBNNAPA | RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Upstream | -70 |
Motif_653 | INTRONLOWER | 3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns | Upstream | -72 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Intron | 3060 |
Motif_97 | E2Fc;E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | Upstream | -120 |