View conserved binding sites


Gene
GM01G39490
Description
lysine N-methyltransferase EZ2
Alias
Glyma01g39490;Glyma01g39490.1;PAC:26325695;Glyma01g39490.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-2
Matrix_119RRTF1Not availableUpstream-13
Upstream-16
Matrix_138RRTF1Not availableUpstream-13
Upstream-16
Upstream-121
Upstream-122
Matrix_147ERF3;AT1G80580Not availableUpstream-2
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-3
Matrix_171LBD3;LBD4Not availableUpstream-314
Matrix_224ERF1Not availableUpstream-4
Matrix_234RAP2.3Not availableUpstream-2
Matrix_252RAP2.6Not availableUpstream-2
Upstream-122
Upstream-123
Matrix_26ATMYB3;MYB24Not availableUpstream-33
Matrix_261ATERF-1Not availableUpstream-2
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-122
Matrix_287ERF2Not availableUpstream-2
Matrix_288RAP2.3Not availableUpstream-121
Matrix_295ERF1Not availableUpstream-5
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-314
Matrix_333GATA3Not availableUpstream-57
Upstream-58
Matrix_334AT3G23230Not availableUpstream-3
Matrix_343AT2G33710Not availableUpstream-2
Matrix_355ERF10;ERF11Not availableUpstream-314
Matrix_360ORA59Not availableUpstream-5
Matrix_363RAP2.3Not availableUpstream-16
Upstream-121
Upstream-122
Matrix_378ATERF1Not availableUpstream-2
Upstream-17
Upstream-122
Upstream-123
Matrix_39AP1Not availableIntron3064
Matrix_396AP3Not availableUpstream-144
Matrix_406ATERF-7Not availableUpstream-3
Matrix_45DRNNot availableUpstream-2
Matrix_473RRTF1Not availableUpstream-2
Upstream-17
Upstream-122
Upstream-123
Matrix_484ATERF13Not availableUpstream-5
Matrix_493AT1G22985;AT1G71130Not availableUpstream-2
Matrix_506DRNL;ATERF-4Not availableUpstream-3
Upstream-314
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-314
Matrix_81YAB1Not availableIntron8481
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-3
Matrix_91CRF3Not availableUpstream-2
Motif_12CEREGLUBOX2PSLEGAcereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)Intron3020
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-92
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-92
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Intron3048
Upstream-74
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-144
Motif_244ABRE-like binding site motifNot availableUpstream-155
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream9501
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-144
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-415
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-120
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream9499
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-74
Motif_562-300CORETGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factorsIntron3076
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-156
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-70
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-72
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionIntron3060
Motif_97E2Fc;E2FdThe E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plantsUpstream-120