View conserved binding sites


Gene
GM01G34620
Description
zipper protein HOX9
Alias
Glyma01g34620;Glyma01g34620.1;PAC:26323884;Glyma01g34620.1
Binding siteNameDescriptionLocationPosition
Matrix_269FHY3/FAR1Not availableUpstream-378
Matrix_468ATHB9The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteinsUpstream-268
Upstream-269
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-235
Upstream-237
Upstream-239
Upstream-241
Upstream-243
Upstream-245
Motif_289LFYStructural basis for LEAFY floral switch function and similarity with helix-turn-helix proteinsUpstream-276
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-267
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-235
Upstream-237
Upstream-239
Upstream-241
Upstream-243
Upstream-245
Upstream-247
Motif_517LEAFYATAGTarget sequence of LEAFY in the intron of AGAMOUS gene in ArabidopsisUpstream-281
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-217
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-236
Upstream-238
Upstream-240
Upstream-242
Upstream-244
Upstream-246
Upstream-248
Upstream-250
Upstream-252
Upstream-254
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-217
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-277