Matrix_101 | ERF5 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -328 |
| | | Upstream | -325 |
| | | Upstream | -323 |
Matrix_119 | RRTF1 | Not available | Upstream | -327 |
| | | Upstream | -324 |
Matrix_130 | TCP16 | Not available | Upstream | -324 |
Matrix_138 | RRTF1 | Not available | Upstream | -327 |
| | | Upstream | -324 |
Matrix_146 | ORA47 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -326 |
| | | Upstream | -323 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -328 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -325 |
Matrix_184 | AGL15 | Not available | Upstream | -368 |
Matrix_190 | ATERF1 | Not available | Upstream | -328 |
| | | Upstream | -326 |
| | | Upstream | -325 |
Matrix_216 | TCP16 | Not available | Upstream | -324 |
Matrix_224 | ERF1 | Not available | Upstream | -327 |
Matrix_234 | RAP2.3 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -325 |
Matrix_252 | RAP2.6 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_261 | ATERF-1 | Not available | Upstream | -326 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -324 |
Matrix_272 | DEAR4 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -325 |
Matrix_287 | ERF2 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_288 | RAP2.3 | Not available | Upstream | -327 |
| | | Upstream | -324 |
Matrix_295 | ERF1 | Not available | Upstream | -326 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -327 |
| | | Upstream | -324 |
Matrix_334 | AT3G23230 | Not available | Upstream | -325 |
Matrix_342 | SPL14 | Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance | Upstream | -172 |
Matrix_343 | AT2G33710 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -327 |
Matrix_360 | ORA59 | Not available | Upstream | -326 |
Matrix_363 | RAP2.3 | Not available | Upstream | -327 |
| | | Upstream | -324 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -326 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -326 |
Matrix_378 | ATERF1 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_406 | ATERF-7 | Not available | Upstream | -328 |
Matrix_409 | DEAR3 | Not available | Upstream | -327 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -325 |
Matrix_45 | DRN | Not available | Upstream | -326 |
Matrix_462 | ATERF-8 | Not available | Upstream | -328 |
Matrix_473 | RRTF1 | Not available | Upstream | -326 |
| | | Upstream | -325 |
Matrix_484 | ATERF13 | Not available | Upstream | -326 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -326 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -327 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -325 |
Matrix_517 | ERF12 | Not available | Upstream | -326 |
| | | Upstream | -323 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -327 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -325 |
| | | Upstream | -324 |
Matrix_91 | CRF3 | Not available | Upstream | -326 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -232 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -365 |
| | | Upstream | -198 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -553 |
Motif_161 | SPL7;SPL4 | A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors | Upstream | -166 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -537 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -269 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -535 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -537 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -477 |
Motif_261 | S1FBOXSORPS1L21 | S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity | Upstream | -468 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -266 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -536 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -379 |
| | | Upstream | -375 |
| | | Upstream | -147 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -325 |
Motif_323 | MYB1LEPR | Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG)) | Upstream | -509 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -533 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -538 |
| | | Upstream | -499 |
Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Upstream | -134 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -537 |
| | | Upstream | -509 |
| | | Upstream | -466 |
| | | Upstream | -134 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -537 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -533 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -309 |
Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | Upstream | -533 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -533 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -527 |
| | | Upstream | -134 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -539 |
| | | Upstream | -498 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Upstream | -533 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -269 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -552 |
| | | Upstream | -482 |
| | | Upstream | -299 |
| | | Upstream | -173 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -538 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -527 |
| | | Upstream | -134 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -552 |
| | | Upstream | -299 |
Motif_683 | AtMYB2 BS in RD22 | Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression | Upstream | -498 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -226 |