View conserved binding sites


Gene
GM01G05310
Description
No description available
Alias
Glyma01g05310;Glyma01g05310.1;PAC:26323615;Glyma01g05310.1
Binding siteNameDescriptionLocationPosition
Matrix_130TCP16Not availableDownstream1231
Upstream-728
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-681
Matrix_171LBD3;LBD4Not availableUpstream-725
Matrix_197NAPNot availableDownstream1245
Matrix_206CUC1;ANAC100Not availableUpstream-753
Upstream-754
Matrix_210ARR1Not availableUpstream-634
Matrix_216TCP16Not availableDownstream1231
Upstream-728
Matrix_24POC1Not availableUpstream-681
Matrix_246ARR10Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulatorsUpstream-631
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-751
Matrix_260CAMTA3Not availableUpstream-723
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsDownstream1231
Upstream-728
Matrix_294MEE35Not availableUpstream-730
Matrix_396AP3Not availableDownstream920
Matrix_4ARR14Not availableUpstream-634
Upstream-635
Matrix_40TCP2Not availableUpstream-728
Matrix_41anac058Not availableUpstream-753
Matrix_420ANAC58Not availableUpstream-752
Upstream-753
Matrix_44CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2Not availableUpstream-753
Upstream-754
Matrix_499ARR18Not availableUpstream-631
Upstream-632
Matrix_511AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180Not availableUpstream-686
Upstream-687
Matrix_82TCP17Not availableUpstream-730
Matrix_94TCP5Not availableUpstream-730
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-23
Upstream-867
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxIntron236
Upstream-292
Motif_122TGTCACACMCUCUMISINTGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin geneDownstream1276
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAIntron166
Intron164
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifDownstream1273
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-278
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1273
Upstream-687
Upstream-701
Motif_22RYREPEATLEGUMINBOXRY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybeanUpstream-561
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisDownstream1243
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsIntron245
Upstream-768
Motif_310ANAERO3CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curatorUpstream-184
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyUpstream-588
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-726
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-899
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-898
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisDownstream919
Upstream-599
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron166
Intron164
Intron162
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesDownstream1273
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-690
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneIntron249
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-714
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-593
Upstream-594
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-579
Upstream-760
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-897
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-562
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-687
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron167
Intron165
Intron163
Intron161
Intron159
Intron157
Intron155
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-178
Upstream-293
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-675