View conserved binding sites


Gene
GM01G05170
Description
galactose/UDP-glucose transporter 3
Alias
Glyma01g05170;Glyma01g05170.1;PAC:26323432;Glyma01g05170.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-196
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-196
Matrix_109GBF3Not availableUpstream-196
Upstream-194
Upstream-128
Matrix_113ABI5Not availableUpstream-196
Upstream-194
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-198
Upstream-131
Matrix_120BEE2Not availableUpstream-195
Matrix_122ABF1;AREB2Not availableUpstream-196
Upstream-195
Matrix_129ABF1Not availableUpstream-195
Matrix_134ABF1Not availableUpstream-195
Matrix_14ZCW32;AT5G62610Not availableUpstream-195
Matrix_145GBF4;AT5G44080Not availableUpstream-194
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-199
Matrix_156POC1Not availableUpstream-196
Upstream-194
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-195
Matrix_169E2F1Not availableUpstream-248
Matrix_192FHY3/FAR1Not availableUpstream-198
Matrix_194HYH;HY5Not availableUpstream-198
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-195
Matrix_206CUC1;ANAC100Not availableUpstream-224
Upstream-199
Matrix_214AP1Not availableUpstream-197
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-198
Matrix_23ANAC46Not availableUpstream-200
Matrix_233MYC3Not availableUpstream-194
Matrix_24POC1Not availableUpstream-199
Matrix_247PIF3Not availableUpstream-195
Upstream-127
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-201
Matrix_259AT1G50680;AT1G51120Not availableUpstream-195
Upstream-127
Matrix_264ATAREB1Not availableUpstream-198
Matrix_296GBF2Not availableUpstream-195
Upstream-194
Upstream-127
Matrix_300bZIP68;bZIP16Not availableUpstream-195
Upstream-194
Upstream-127
Matrix_301PIL5Not availableUpstream-200
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-197
Matrix_308INONot availableUpstream-228
Matrix_331GBF1Not availableUpstream-196
Upstream-194
Upstream-128
Matrix_332SPT;ALCNot availableUpstream-195
Upstream-194
Upstream-127
Matrix_338AP2Not availableUpstream-198
Matrix_345POC1Not availableUpstream-198
Upstream-131
Matrix_356PRR5Not availableUpstream-202
Upstream-198
Matrix_389ILR3Not availableUpstream-195
Matrix_403BZR1Not availableUpstream-197
Matrix_41anac058Not availableUpstream-224
Upstream-199
Matrix_420ANAC58Not availableUpstream-223
Matrix_44CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2Not availableUpstream-199
Matrix_443AGL15Not availableUpstream-197
Matrix_456bZIP60Not availableUpstream-127
Matrix_475AT5G64220Not availableUpstream-259
Matrix_480BES1Not availableUpstream-196
Matrix_488ABF1Not availableUpstream-263
Matrix_53MYC3Not availableUpstream-257
Upstream-197
Matrix_55PIF3Not availableUpstream-196
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-196
Upstream-126
Matrix_60AT1G01260;AT5G57150Not availableUpstream-194
Matrix_64PIF5Not availableUpstream-194
Matrix_65POC1;PIL1Not availableUpstream-194
Upstream-193
Matrix_7PIF4Not availableUpstream-195
Matrix_77PRR5Not availableUpstream-197
Upstream-196
Matrix_80BIM1Not availableUpstream-256
Upstream-196
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-268
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-193
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-424
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-193
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-195
Motif_207MAMMALENHANCore sequence in enhancers from polyoma virus and from the IgM heavy chain geneUpstream-203
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-260
Upstream-253
Upstream-252
Upstream-194
Upstream-193
Motif_24CAMTA3Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing toleranceUpstream-253
Motif_244ABRE-like binding site motifNot availableUpstream-195
Upstream-193
Upstream-182
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-195
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-259
Upstream-252
Upstream-244
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-424
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-193
Upstream-180
Upstream-125
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-206
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-194
Upstream-193
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-194
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-226
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Upstream-177
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-187
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-195
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesDownstream3418
Motif_599LREBOXIIPCCHS1;HY5BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-195
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-202
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-195
Motif_638ABRE binding site motifNot availableUpstream-195
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-188
Upstream-187
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-208
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisUpstream-424